Browse Element(s) Details


Os.8743.1.S1_at

Description gb:NM_185986.1
DB_XREF= gi:34899057
GEN=P0047B07.31
TID=Os.8743.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU092143(C10985)~similar to Arabidopsis thaliana chromosome 1, At1g10660~unknown protein (P0047B07.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) contains EST AU092143(C10985)~similar to Arabidopsis thaliana chromosome 1, At1g10660~unknown protein (P0047B07.31), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4643010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46380Os.8756.2.A1_at11/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46380OsAffx.15364.2.S1_x_at1/117+27675830..27677783glycosyltransferase, putative, expressed
LOC_Os07g46390Os.6097.2.S1_x_at11/117+27682692..27684831TRAF-type zinc finger, putative, expressed
LOC_Os07g46400Os.26780.1.S1_at11/117+27684845..27687198expressed protein
LOC_Os07g46410Os.7284.1.S1_a_at11/117+27692928..27697470thioredoxin-disulfide reductase family protein, expressed
LOC_Os07g46420Os.48017.1.S1_x_at5/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_x_at4/117+27698330..27699259hypothetical protein
LOC_Os07g46420Os.55366.1.S1_at1/117+27698330..27699259hypothetical protein
LOC_Os07g46430Os.8743.1.S1_at10/117+27699886..27703496expressed protein
LOC_Os07g46440Os.18009.1.S1_a_at11/117+27704665..27708261ribosomal protein S9 containing protein, expressed
LOC_Os07g46450Os.32521.3.S1_x_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.1.S1_at11/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46450Os.32521.2.S1_at10/117+27711627..27720965pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g46460Os.7907.2.S1_x_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S2_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os07g46460Os.7907.1.S1_a_at11/117+27721322..27736505Ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8743.1.S1_at--537--3051Chr07:27702199..27702223 (25 bp)
AATCGTGAGTTTTCCACTTCTTCTG
LOC_Os07g46430
Os.8743.1.S1_at--1090--3611Chr07:27701623..27701647 (25 bp)
CTTGTGCCATTCTTTTACCGTGATA
LOC_Os07g46430
Os.8743.1.S1_at--671--10231Chr07:27701252..27701620 (25 bp)
TTTGGACTTTCCTTGATCACTGATG
LOC_Os07g46430
Os.8743.1.S1_at--1118--371Chr07:27701237..27701261 (25 bp)
ATCACTGATGGCATGCATTCTCTTA
LOC_Os07g46430
Os.8743.1.S1_at--120--9971Chr07:27701083..27701107 (25 bp)
TACCGCCTGGCTTTCTTTGTATTTT
LOC_Os07g46430
Os.8743.1.S1_at--806--10851Chr07:27701060..27701084 (25 bp)
TTGGAGCTGCTCCTATGTAACCTTC
LOC_Os07g46430
Os.8743.1.S1_at--1121--8731Chr07:27701045..27701069 (25 bp)
TGTAACCTTCCAATGGGTCCTTCAT
LOC_Os07g46430
Os.8743.1.S1_at--717--7791Chr07:27701030..27701054 (25 bp)
GGTCCTTCATGCTTGTGGAGCTATA
LOC_Os07g46430
Os.8743.1.S1_at--210--8671NONE
TGTGGAGCTATATCCTGGCCATACC
NONE
Os.8743.1.S1_at--525--871Chr07:27700158..27700182 (25 bp)
ATGGCCATTGTTCATATCCCTTGCT
LOC_Os07g46430
Os.8743.1.S1_at--764--911Chr07:27700109..27700133 (25 bp)
AGGCAAAGCAAACTTACTTCCCCAG
LOC_Os07g46430
Target Sequence 
AATCGTGAGTTTTCCACTTCTTCTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAA
TGAGAAAAGAGCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCTGACTGATA
TCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAANTTTGGACTTTCCTTGATCACTGATGGCATGCATTCT
CTTAATGCTGTTCTTTTACTGATAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATT
TTGGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGCCATACCCATTTCTTGACC
TTTCATCGTCAGGGGCTCCTCTATACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTC
AAGGCAAAGCAAACTTACTTCCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis