Browse Element(s) Details


Os.8753.1.S1_at

Description gb:AK066108.1
DB_XREF= gi:32976126
TID=Os.8753.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0042E19.40), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052H09, full insert sequence.
FL= gb:AK066108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g325208/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32444Os.20246.1.S1_at11/1110+16676065..16677333expressed protein
LOC_Os10g32470Os.46467.1.S1_at11/1110+16678291..16681525expressed protein
LOC_Os10g32470Os.46467.2.S1_x_at11/1110+16678291..16681525expressed protein
LOC_Os10g32500OsAffx.30641.1.S1_at11/1110+16689531..16692082expressed protein
LOC_Os10g32509NANA10+16696487..16696798hypothetical protein
LOC_Os10g32520Os.8753.4.S1_x_at9/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.1.S1_at8/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.4.S1_at4/1110+16698772..16705749expressed protein
LOC_Os10g32520OsAffx.1293.1.S1_x_at1/1110+16698772..16705749expressed protein
LOC_Os10g32540Os.10154.1.S1_at9/1110+16710651..16718168SAP domain containing protein, expressed
LOC_Os10g32550Os.10551.1.S1_at11/1110+16718650..16724037Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os10g32560Os.35344.3.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560Os.35344.18.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560OsAffx.22940.5.S1_x_at3/1110+16726740..16732635transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8753.1.S1_at--1156--4911NONE
GCTTGCCTCTGATATTGCACGTGCA
NONE
Os.8753.1.S1_at--1037--9951NONE
TACCCTCTCCAAGAGATTGCTCGTG
NONE
Os.8753.1.S1_at--747--3771NONE
CTCTCCAAGAGATTGCTCGTGAACC
NONE
Os.8753.1.S1_at--64--10131Chr10:16699004..16699028 (25 bp)
TATGATCTTTTCAAGACATTCTTGA
LOC_Os10g32520
Os.8753.1.S1_at--170--7371Chr10:16698870..16698894 (25 bp)
GTGACATGTCAGGTCTTCAACAATG
LOC_Os10g32520
Os.8753.1.S1_at--671--7111Chr10:16698863..16698887 (25 bp)
GTCAGGTCTTCAACAATGCCTCAAT
LOC_Os10g32520
Os.8753.1.S1_at--692--3471Chr10:16698861..16698885 (25 bp)
CAGGTCTTCAACAATGCCTCAATGC
LOC_Os10g32520
Os.8753.1.S1_at--986--6591Chr10:16698830..16698854 (25 bp)
GATTGTACTCTTTTGATCAAGCCGA
LOC_Os10g32520
Os.8753.1.S1_at--699--6451Chr10:16698816..16698840 (25 bp)
GATCAAGCCGATGTGCCTATTTGTG
LOC_Os10g32520
Os.8753.1.S1_at--752--1671Chr10:16698811..16698835 (25 bp)
AGCCGATGTGCCTATTTGTGTTTTC
LOC_Os10g32520
Os.8753.1.S1_at--1104--2291Chr10:16698774..16698798 (25 bp)
AAATGGACATATGCTGCTTTTGATT
LOC_Os10g32520
Target Sequence 
GCTTGCCTCTGATATTGCACGTGCACCCATTAGAGTTGGAGAAGACCAACCTCCTCCTTCCTGGGACCTTGTACCCTCTC
CAAGAGATTGCTCGTGAACCNACTATAGTTGGAGAAGAAATTTTCTGGGGAGCGAAATAAAGGAAATGCAATGTGTTGCT
GACTTTGTGGGGAATGGGAGGAAGTCCTGATATTTTNTTTATATGTAGGGTAANACTTATGATCTTTTCAAGACATTCTT
GAAAGCANAGCANTGGGTGGCTTTCTGGTATGGACANTGCANGGAAGAGCACNTTCTATTCANGGGTGAAGACATCCATT
GGNAGCAAGCATTGGTGTTGGATGTAATTGTTGCCANTTGTGACATGTCAGGTCTTCAACAATGCCTCAATGCNGTTCTG
ATTGTACTCTTTTGATCAAGCCGATGTGCCTATTTGTGTTTTCTATTTTCCTTTGAAATGGACATATGCTGCTTTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis