Browse Element(s) Details


Os.8753.4.S1_x_at

Description gb:NM_196887.1
DB_XREF= gi:37535133
TID=Os.8753.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0042E19.40), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0042E19.38), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g325209/11expressed protein
LOC_Os06g394608/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g120503/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g368202/11expressed protein
LOC_Os05g419402/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g414101/11expressed protein
LOC_Os12g227701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32444Os.20246.1.S1_at11/1110+16676065..16677333expressed protein
LOC_Os10g32470Os.46467.1.S1_at11/1110+16678291..16681525expressed protein
LOC_Os10g32470Os.46467.2.S1_x_at11/1110+16678291..16681525expressed protein
LOC_Os10g32500OsAffx.30641.1.S1_at11/1110+16689531..16692082expressed protein
LOC_Os10g32509NANA10+16696487..16696798hypothetical protein
LOC_Os10g32520Os.8753.4.S1_x_at9/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.1.S1_at8/1110+16698772..16705749expressed protein
LOC_Os10g32520Os.8753.4.S1_at4/1110+16698772..16705749expressed protein
LOC_Os10g32520OsAffx.1293.1.S1_x_at1/1110+16698772..16705749expressed protein
LOC_Os10g32540Os.10154.1.S1_at9/1110+16710651..16718168SAP domain containing protein, expressed
LOC_Os10g32550Os.10551.1.S1_at11/1110+16718650..16724037Chaperonin CPN60-1, mitochondrial precursor, putative, expressed
LOC_Os10g32560Os.35344.3.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560Os.35344.18.S1_x_at8/1110+16726740..16732635transposon protein, putative, Mutator sub-class
LOC_Os10g32560OsAffx.22940.5.S1_x_at3/1110+16726740..16732635transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8753.4.S1_x_at--865--105710Chr10:16696505..16696598 (25 bp)
TTCTCTCCGGTGAGCACGCTGCCTT
NONE
Os.8753.4.S1_x_at--75--10315Chr09:6802309..6802340 (24 bp)
TTTCCCCTTCTCTTGCAAAGCTAGA
LOC_Os09g12050
Os.8753.4.S1_x_at--10--9291NONE
TCCCCTTCTCTTGCAAAGCTAGATT
NONE
Os.8753.4.S1_x_at--210--4211Chr10:16702638..16702658 (21 bp)
CCCCTTCTCTTGCAAAGCTAGATTG
LOC_Os10g32520
Os.8753.4.S1_x_at--247--9531NONE
TCTCTTGCAAAGCTAGATTGCACGT
NONE
Os.8753.4.S1_x_at--642--2354Chr06:23430668..23430687 (20 bp)
AAAGCTAGATTGCACGTGCACCCAT
LOC_Os06g39460
Os.8753.4.S1_x_at--333--4874Chr06:23430668..23430690 (23 bp)
GCTAGATTGCACGTGCACCCATTAG
LOC_Os06g39460
Os.8753.4.S1_x_at--1095--54Chr06:23430671..23430695 (25 bp)
ATTGCACGTGCACCCATTAGAGTTG
LOC_Os06g39460
Os.8753.4.S1_x_at--853--5074Chr06:23430674..23430698 (25 bp)
GCACGTGCACCCATTAGAGTTGGAG
LOC_Os06g39460
Os.8753.4.S1_x_at--161--4014Chr06:23430677..23430701 (25 bp)
CGTGCACCCATTAGAGTTGGAGAAG
LOC_Os06g39460
Os.8753.4.S1_x_at--918--6618Chr12:12847092..12847116 (25 bp)
GTTGGAGAAGACCAACCTCCTCCTT
LOC_Os12g22770
Target Sequence 
TTCTCTCCGGTGAGCACGCTGCCTTTCCCCTTCTCTTGCAAAGCTAGATTGCACGTGCACCCATTAGAGTTGGAGAAGAC
CAACCTCCTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8753.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis