Browse Element(s) Details


Os.8758.1.S1_s_at

Description gb:AK071909.1
DB_XREF= gi:32981932
TID=Os.8758.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.8758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0003E08.14 (P0003E08.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065H16, full insert sequence.
FL= gb:AK071909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4754011/11CTD-phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47510NANA1+27482373..27485525retrotransposon protein, putative, unclassified, expressed
LOC_Os01g47520OsAffx.21518.1.S1_s_at10/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.2.S1_at8/111+27486125..27489069hypothetical protein
LOC_Os01g47520OsAffx.21518.1.S1_at6/111+27486125..27489069hypothetical protein
LOC_Os01g47530Os.14999.1.S1_x_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.2.S1_at11/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47530Os.14999.3.S1_x_at10/111+27498135..27505279Protein kinase domain containing protein, expressed
LOC_Os01g47540Os.8758.1.S1_s_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47540Os.37799.1.S1_at11/111+27505543..27510688CTD-phosphatase, putative, expressed
LOC_Os01g47550Os.4879.1.S1_a_at11/111+27512481..27518103kinase, pfkB family protein, expressed
LOC_Os01g47560Os.28828.1.S2_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed
LOC_Os01g47560Os.28828.1.S1_at11/111+27523317..27527838WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000775cellular_componentchromosome, pericentric region
GO:0005634cellular_componentnucleus
GO:0005694cellular_componentchromosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8758.1.S1_s_at--1106--10771Chr01:27506308..27506332 (25 bp)
TTGTTATATTCACAGCCAGCCAAAG
LOC_Os01g47540
Os.8758.1.S1_s_at--458--4411Chr01:27506294..27506318 (25 bp)
GCCAGCCAAAGTGTTTATGCAGATC
LOC_Os01g47540
Os.8758.1.S1_s_at--245--651Chr01:27506278..27506302 (25 bp)
ATGCAGATCAGCTGCTTGACATCTT
LOC_Os01g47540
Os.8758.1.S1_s_at--342--4931Chr01:27506265..27506289 (25 bp)
GCTTGACATCTTGGATCCAGAGAAA
LOC_Os01g47540
Os.8758.1.S1_s_at--160--2571Chr01:27506239..27506263 (25 bp)
AACTGTTCTCTAGGCGTTATTTCCG
LOC_Os01g47540
Os.8758.1.S1_s_at--443--191Chr01:27506221..27506245 (25 bp)
ATTTCCGGGAGTCATGTGTATTTAC
LOC_Os01g47540
Os.8758.1.S1_s_at--995--9991Chr01:27506190..27506214 (25 bp)
TAGCTACACGAAGGATCTGACAGTT
LOC_Os01g47540
Os.8758.1.S1_s_at--985--3431Chr01:27506170..27506194 (25 bp)
CAGTTGTTGGAGTTGACCTTGCTAA
LOC_Os01g47540
Os.8758.1.S1_s_at--758--7131Chr01:27506141..27506165 (25 bp)
GTCATAATTGACAACACTCCGCAGG
LOC_Os01g47540
Os.8758.1.S1_s_at--650--6611Chr01:27505887..27505911 (25 bp)
GTTGGTTTAGCGACGACTCTGATGA
LOC_Os01g47540
Os.8758.1.S1_s_at--931--8851Chr01:27505814..27505838 (25 bp)
TGATGTCCGACCCATAATTGCCAAG
LOC_Os01g47540
Target Sequence 
TTGTTATATTCACAGCCAGCCAAAGTGTTTATGCAGATCAGCTGCTTGACATCTTGGATCCAGAGAAAAAACTGTTCTCT
AGGCGTTATTTCCGGGAGTCATGTGTATTTACAAACACTAGCTACACGAAGGATCTGACAGTTGTTGGAGTTGACCTTGC
TAAAGTTGTCATAATTGACAACACTCCGCAGGTTTTCCAGTTGCAAGTGAATAATGGTATACCCATAGAGAGTTGGTTTA
GCGACGACTCTGATGAGGCATTACCTCAGCTGATTCCGTTCCTGGAGACCCTTGCTTCTGCGGATGATGTCCGACCCATA
ATTGCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8758.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis