Browse Element(s) Details


Os.8779.1.S1_at

Description gb:AK102007.1
DB_XREF= gi:32987216
TID=Os.8779.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative AMP deaminase (P0034A04.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079N23, full insert sequence.
FL= gb:AK102007.1 gb:AK064333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4927011/11AMP deaminase, putative, expressed
LOC_Os10g303001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49230Os.33799.1.S1_at11/117+29477078..29481906Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os07g49240Os.27462.1.S1_at11/117+29482828..29485662ser-thr protein kinase, putative, expressed
LOC_Os07g49250Os.4375.1.S1_a_at11/117+29488318..29490288Pyruvate decarboxylase isozyme 3, putative, expressed
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49310Os.17623.1.S1_at11/117+29529574..29532424Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os07g49320Os.19304.1.S1_at11/117+29532776..29544001HEAT repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009168biological_processpurine ribonucleoside monophosphate biosynthesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0003876molecular_functionAMP deaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8779.1.S1_at--750--9671Chr07:29509726..29509750 (25 bp)
TCACCAGACAAATGTTCCTCACATC
LOC_Os07g49270
Os.8779.1.S1_at--613--6592Chr07:29509753..29509879 (25 bp)
GATTGAATTCCGACACACTATTTGG
LOC_Os07g49270
Os.8779.1.S1_at--602--10291Chr07:29510028..29510052 (25 bp)
TTTCCAGGTACAACCAAGACCGTGC
LOC_Os07g49270
Os.8779.1.S1_at--360--7312Chr10:15408446..15408679 (25 bp)
GTGCGGTTTCTACTTGCTTGCGGAA
LOC_Os10g30300
Os.8779.1.S1_at--313--10291Chr07:29510106..29510130 (25 bp)
TTTCGATGAATCTCCGTAGCGTGTT
LOC_Os07g49270
Os.8779.1.S1_at--1084--1611Chr07:29510123..29510147 (25 bp)
AGCGTGTTGCGTTCCCTAGTAGTAG
LOC_Os07g49270
Os.8779.1.S1_at--718--8691Chr07:29510168..29510192 (25 bp)
TGTTAGGACTGAGGCCGTACCATAA
LOC_Os07g49270
Os.8779.1.S1_at--318--1211Chr07:29510225..29510249 (25 bp)
AGTTTAAACATACGCATGCATCGGG
LOC_Os07g49270
Os.8779.1.S1_at--819--11Chr07:29510279..29510303 (25 bp)
ATTGATAAACCCCAACTAGCCAAGG
LOC_Os07g49270
Os.8779.1.S1_at--1137--1691Chr07:29510296..29510320 (25 bp)
AGCCAAGGGTCTAGTGAGGTTGCAC
LOC_Os07g49270
Os.8779.1.S1_at--150--10411Chr07:29510356..29510380 (25 bp)
TTATACATGTGATGCCGTTCGATAC
LOC_Os07g49270
Target Sequence 
TCACCAGACAAATGTTCCTCACATCAGGATTGAATTCCGACACACTATTTGGAAAGAAGAAATGGAGCTAATACATCTGA
GGAATGTTGATATACCGGAAGAAATTGATAGGTGAAGACCTGGCAAGAATTTTGCAAACCCTGAAGTTACTTGGTTGTTG
ATGATGGTCCTGGAAGGCACCCCATCTTCCTACCATAAACTTTCCAGGTACAACCAAGACCGTGCGGTTTCTACTTGCTT
GCGGAAGGGAGGAGAAAGGGATCTAGGATGATTCTACTTTTCGATGAATCTCCGTAGCGTGTTGCGTTCCCTAGTAGTAG
GATTTTGATAAAAGAAATTATGTTAGGACTGAGGCCGTACCATAAAATAAGAAAGATTTGAGTCATGGAATACTGGAAGT
TTAAACATACGCATGCATCGGGGGTCATATAGTCCAAAATAACAATGGAAAATTGATAAACCCCAACTAGCCAAGGGTCT
AGTGAGGTTGCACATGTGCTGTAAGCTATTACTAGTACACGCGTACATTTATACATGTGATGCCGTTCGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis