Browse Element(s) Details


Os.8780.1.S2_at

Description gb:CB632741
DB_XREF= gi:29627730
DB_XREF=OSIIEb11C22.r
CLONE=OSIIEb11C22
TID=Os.8780.1
CNT=23
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.8780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-C05, full insert sequence
FL= gb:AK108356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2442011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24390Os.33708.1.S1_s_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.56276.1.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24390Os.33708.2.S1_at11/118+14592095..14599190expressed protein
LOC_Os08g24400Os.50132.1.S1_at11/118+14605752..14609430CRSP complex subunit 2, putative, expressed
LOC_Os08g24410Os.45957.4.S1_x_at6/118+14613329..14618665retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g24420Os.8780.1.S1_at11/118+14619766..14626792expressed protein
LOC_Os08g24420Os.8780.1.S2_at11/118+14619766..14626792expressed protein
LOC_Os08g24434Os.54383.1.S1_at11/118+14627447..14633423expressed protein
LOC_Os08g24450OsAffx.30966.3.A1_x_at11/118+14635916..14643574AT hook motif-containing protein, putative
LOC_Os08g24460OsAffx.19287.2.S1_s_at11/118+14644658..14646629hypothetical protein
LOC_Os08g24470OsAffx.31415.1.S1_at11/118+14647145..14650016hypothetical protein
LOC_Os08g24470OsAffx.31415.2.S1_s_at11/118+14647145..14650016hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008284biological_processpositive regulation of cell proliferation
GO:0045941biological_processpositive regulation of transcription
GO:0000119cellular_componentmediator complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8780.1.S2_at--1087--8531Chr08:14626199..14626223 (25 bp)
TGGAGCAGCTCTTTGATGGTATTTC
LOC_Os08g24420
Os.8780.1.S2_at--694--1151Chr08:14626247..14626271 (25 bp)
AGTCGTTTGGTTGGTGATCTCGGAA
LOC_Os08g24420
Os.8780.1.S2_at--864--6391Chr08:14626262..14626286 (25 bp)
GATCTCGGAACTTAACCTGGTCTAC
LOC_Os08g24420
Os.8780.1.S2_at--541--10491Chr08:14626273..14626297 (25 bp)
TTAACCTGGTCTACAACTACAACTC
LOC_Os08g24420
Os.8780.1.S2_at--607--8771Chr08:14626339..14626363 (25 bp)
TGTATTTATACTTGAGCTCCCTCCA
LOC_Os08g24420
Os.8780.1.S2_at--386--1592Chr08:14626353..14626377 (25 bp)
AGCTCCCTCCAACTCATAATAGTGG
LOC_Os08g24420
Os.8780.1.S2_at--928--10391Chr08:14626413..14626437 (25 bp)
TTTTGAGCATCGCATGCAGCATGCA
LOC_Os08g24420
Os.8780.1.S2_at--157--3531Chr08:14626432..14626456 (25 bp)
CATGCATCATGGGAGCTTATCAAAT
LOC_Os08g24420
Os.8780.1.S2_at--1119--6331Chr08:14626608..14626632 (25 bp)
GATGCTCGTGTACTAGTTGGGATAT
LOC_Os08g24420
Os.8780.1.S2_at--439--5111Chr08:14626666..14626690 (25 bp)
GCACATTGACATTTAGCACTGTAGT
LOC_Os08g24420
Os.8780.1.S2_at--531--1431Chr08:14626713..14626737 (25 bp)
AGAAAATTGCGTTCTGTCTGTAAAA
LOC_Os08g24420
Target Sequence 
TGGAGCAGCTCTTTGATGGTATTTCATTGACAAAGCATCTGNACTGGGAGTCGTTTGGTTGGTGATCTCGGAACTTAACC
TGGTCTACAACTACAACTCTACATTTNGTCTTGCAGGCAGGAAGGAACTCAATACAATATTTGTATTTATACTTGAGCTC
CCTCCAACTCATAATAGTGGTANTTCTAAACGCAACCTGTAAAAGGGCGCNACAATTTTGAGCATCGCATGCAGCATGCA
TCATGGGAGCTTATCAAATGATGATACCCNTTGATCTATGGTTGATTTTGAGAAATTGTAGAGAAAGATAAAAGCATTGT
AATCTGAAATTTGGTGCTTGTGGATTTGGATTTAAAGAGATGACAAACAAAATAGTCGGGCAATGCTTGTNNTGCTGAAT
GGTTCAAAATGATGCTCGTGTACTAGTTGGGATATGGTTTGTGCTATTGATTTATGAGGGGGCATATTGCACATTGACAT
TTAGCACTGTAGTATTAGAATCAAAGATGTCTGAAAGAAAATTGCGTTCTGTCTGTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8780.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis