Browse Element(s) Details


Os.8831.1.S1_at

Description gb:CB665713
DB_XREF= gi:29669438
DB_XREF=OSJNEd12E13.r
CLONE=OSJNEd12E13
TID=Os.8831.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.8831 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_198815.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1689011/11glycosyltransferase family 14 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16850OsAffx.12886.1.S1_at11/113+9338517..9339986Dof domain, zinc finger family protein, expressed
LOC_Os03g16860Os.11029.1.S1_at11/113+9349211..9352126Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16870Os.16498.1.S1_at8/113+9352280..9354845expressed protein
LOC_Os03g16874Os.9995.1.S1_at10/113+9355035..9356774expressed protein
LOC_Os03g16880Os.54647.1.S1_at11/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16880Os.52782.1.S1_at1/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os03g16910Os.27079.1.A1_at11/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16910OsAffx.2532.1.S1_at1/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_s_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8831.1.S1_at--655--10671Chr03:9362531..9362555 (25 bp)
TTCCACACGGTGATCTGCAACTCAA
LOC_Os03g16890
Os.8831.1.S1_at--677--711Chr03:9362479..9362503 (25 bp)
ATGATCTCCGATTCATGGCATGGGA
LOC_Os03g16890
Os.8831.1.S1_at--306--3591Chr03:9362440..9362464 (25 bp)
CATTACCTGTTAACCTGACAACCGA
LOC_Os03g16890
Os.8831.1.S1_at--688--8951Chr03:9362425..9362449 (25 bp)
TGACAACCGAGCATTTTGACGCAAT
LOC_Os03g16890
Os.8831.1.S1_at--524--211Chr03:9362382..9362406 (25 bp)
ATTTGCACACTCCTTTGCCAATGAC
LOC_Os03g16890
Os.8831.1.S1_at--124--6511Chr03:9362345..9362369 (25 bp)
GATATGATCGACACCAAGCTGTTGA
LOC_Os03g16890
Os.8831.1.S1_at--418--1771Chr03:9362313..9362337 (25 bp)
ACCTGAACGATTCACACCTGGTGGA
LOC_Os03g16890
Os.8831.1.S1_at--521--2331Chr03:9362261..9362285 (25 bp)
AAAGATCCATGTTCCTTCTTCGGAA
LOC_Os03g16890
Os.8831.1.S1_at--218--5311Chr03:9362239..9362263 (25 bp)
GAAGGTCTTTTGTTCTGAGGCCGAC
LOC_Os03g16890
Os.8831.1.S1_at--537--6031Chr03:9362058..9362082 (25 bp)
GAGATGGTTTCTCATTGTTGCGGCT
LOC_Os03g16890
Os.8831.1.S1_at--968--2151Chr03:9362017..9362041 (25 bp)
ACAGCGTGTCGTTGTACATTTGCAA
LOC_Os03g16890
Target Sequence 
TTCCACACGGTGATCTGCAACTCAAAGTACTATCAGAACACTACCGTTAATAATGATCTCCGATTCATGGCATGGGACAA
CCCTCCACGAACATTACCTGTTAACCTGACAACCGAGCATTTTGACGCAATCGCAAGCAGCGGTGCACCATTTGCACACT
CCTTTGCCAATGACAATCCAGTCCTGGATATGATCGACACCAAGCTGTTGAGGAGAGCACCTGAACGATTCACACCTGGT
GGATGGTGCTTAGGTAGCTCGGTAAATGACAAAGATCCATGTTCCTTCTTCGGAAGGTCTTTTGTTCTGAGGCCGACGAA
AAGTTCGGCAAAGTTAGAGAAATTGCTGTTGAAACTTTTGGAACCTGATAATTTCAGGTCTAAACAGTGTATATAACACA
TTCTTGTTACATGTAGCCTTGTAGCCAGTTGTAGAATTTTGATAGTGTTCAGAGGCAAGTGTGACCGGAGGTGGAGATGG
TTTCTCATTGTTGCGGCTGTAGGCACACAGTGACACAGCGTGTCGTTGTACATTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis