Browse Element(s) Details


Os.8859.1.S1_s_at

Description gb:C22382
DB_XREF= gi:2317328
DB_XREF=C22382
CLONE=C12741_5Z
TID=Os.8859.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8859 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_193070.1 (A.thaliana) extensin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0799011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07960NANA7+4002845..4003279hypothetical protein
LOC_Os07g07974Os.10382.1.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.2.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S2_x_at5/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_x_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.50851.1.S1_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.19069.1.S2_x_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07990Os.8859.1.S1_s_at11/117+4027661..4029140Leucine Rich Repeat family protein, expressed
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8859.1.S1_s_at--1089--8291Chr07:4028155..4028179 (25 bp)
GGCTCAGGAACTTCACCTACTCATA
LOC_Os07g07990
Os.8859.1.S1_s_at--1101--9891Chr07:4028138..4028162 (25 bp)
TACTCATACAACTACTTCTGCGGCG
LOC_Os07g07990
Os.8859.1.S1_s_at--868--3751Chr07:4028136..4028160 (25 bp)
CTCATACAACTACTTCTGCGGCGAG
LOC_Os07g07990
Os.8859.1.S1_s_at--671--91Chr07:4027913..4027937 (25 bp)
ATTCGTTGGTGAATTATTCCTACAC
LOC_Os07g07990
Os.8859.1.S1_s_at--131--6631Chr07:4027909..4027933 (25 bp)
GTTGGTGAATTATTCCTACACACAA
LOC_Os07g07990
Os.8859.1.S1_s_at--430--9231Chr07:4027896..4027920 (25 bp)
TCCTACACACAAAAATCAGTCAATC
LOC_Os07g07990
Os.8859.1.S1_s_at--910--3651Chr07:4027785..4027809 (25 bp)
CTTTTTCTTTTTCACAGAGAGGTTG
LOC_Os07g07990
Os.8859.1.S1_s_at--367--3671Chr07:4027779..4027803 (25 bp)
CTTTTTCACAGAGAGGTTGGTAATT
LOC_Os07g07990
Os.8859.1.S1_s_at--51--8191Chr07:4027738..4027762 (25 bp)
GGAAGAGTACATGATACATTACAGT
LOC_Os07g07990
Os.8859.1.S1_s_at--800--2071Chr07:4027723..4027747 (25 bp)
ACATTACAGTATATTTGTGACTTAC
LOC_Os07g07990
Os.8859.1.S1_s_at--259--7371Chr07:4027707..4027731 (25 bp)
GTGACTTACTGATCATTGTTTGTTT
LOC_Os07g07990
Target Sequence 
GGCTCAGGAACTTCACCTACTCATACAACTACTTCTGCGGCGAGCCGGAGCGGTGCCTCCGCCTCCGCCGCGTCGACGAC
CGCCAGAACTGCATCGCCGGGAGGCCCGACCAGCGCCCGGCCGACCAGTGCCTCGCCTTCCTCCACCGCCCGCCGGTGCA
CTGCGACGCCCACGGCTGNTTCGCGCCGCCGGGCCACTACTAACCGACGGCGGCGGCGGCGGCAACTCCGGCGAGAAGTG
AAATTCGTTGGTGAATTATTCCTACACACAAAAATCAGTCAATCACTCAATCAAGCATCGTATATATATACACTGTAATT
TTTTTTCTTCTTCTTATTCTCTTTGGATTTTTTTTCTCTTTTTTTGTTTTCTTTTTCTTTTTCACAGAGAGGTTGGTAAT
TAATAATGGGATTTGTAGGAAGAGTACATGATACATTACAGTATATTTGTGACTTACTGATCATTGTTTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8859.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis