Browse Element(s) Details


Os.8876.1.S1_at

Description gb:AK069222.1
DB_XREF= gi:32979246
TID=Os.8876.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014L15, full insert sequence.
FL= gb:AK069222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1908011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19030OsAffx.15200.2.S1_x_at5/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.2.S1_at3/113+10640221..10640985hypothetical protein
LOC_Os03g19030OsAffx.15200.3.S1_s_at1/113+10640221..10640985hypothetical protein
LOC_Os03g19040Os.54627.1.S1_at11/113+10641421..10642485expressed protein
LOC_Os03g19050Os.35344.18.S1_x_at10/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050Os.35344.3.S1_x_at9/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_at5/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19050OsAffx.22940.5.S1_x_at4/113+10643766..10650554SWIM zinc finger family protein
LOC_Os03g19060NANA3+10652230..10655534hypothetical protein
LOC_Os03g19070Os.10091.1.S1_at11/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_s_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.2.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19070OsAffx.24964.1.S1_x_at2/113+10656727..10657977long cell-linked locus protein, putative, expressed
LOC_Os03g19080Os.8876.1.S1_at11/113+10663346..10667807expressed protein
LOC_Os03g19090Os.6269.1.S1_at11/113+10671364..10672937expressed protein
LOC_Os03g19104OsAffx.25139.1.S1_at11/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.2.S1_x_at7/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.46012.3.S1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.27088.1.A1_x_at4/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.10263.1.S1_at2/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.45902.1.A1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.10222.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104Os.54691.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19104OsAffx.22442.1.S1_x_at1/113+10676798..10684256retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g19120OsAffx.12932.1.S1_at11/113+10686231..10692046P protein C-terminus containing protein
LOC_Os03g19120Os.57514.1.S1_x_at1/113+10686231..10692046P protein C-terminus containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8876.1.S1_at--976--2791Chr03:10667238..10667262 (25 bp)
AAGATGATGTATCGGTGATGGACCC
LOC_Os03g19080
Os.8876.1.S1_at--893--7651Chr03:10667330..10667354 (25 bp)
GGGTACAGAAAGCTCCTGTTCGACT
LOC_Os03g19080
Os.8876.1.S1_at--1074--8791Chr03:10667346..10667370 (25 bp)
TGTTCGACTGCGTAAGTGAATGCCT
LOC_Os03g19080
Os.8876.1.S1_at--747--7351Chr03:10667361..10667385 (25 bp)
GTGAATGCCTGGAGACGAGACGTCT
LOC_Os03g19080
Os.8876.1.S1_at--894--7591Chr03:10667443..10667467 (25 bp)
GGGCATAGAAACTGAAGTCTGCAAT
LOC_Os03g19080
Os.8876.1.S1_at--429--1071Chr03:10667597..10667621 (25 bp)
AGGGAAATACTGAGCTCACTGGTCG
LOC_Os03g19080
Os.8876.1.S1_at--118--7411Chr03:10667627..10667651 (25 bp)
GTGATCGGCGACGTCTTTGTGAGAC
LOC_Os03g19080
Os.8876.1.S1_at--609--7071Chr03:10667677..10667701 (25 bp)
GTAATCTGATCTCGAGTGTTGTTGT
LOC_Os03g19080
Os.8876.1.S1_at--80--10711Chr03:10667722..10667746 (25 bp)
TTGTTAAGTTATATCCATCCCTATT
LOC_Os03g19080
Os.8876.1.S1_at--297--551Chr03:10667738..10667762 (25 bp)
ATCCCTATTTGATTTGTCGACCAGA
LOC_Os03g19080
Os.8876.1.S1_at--124--7231Chr03:10667753..10667777 (25 bp)
GTCGACCAGACTTGATCAAATCAGT
LOC_Os03g19080
Target Sequence 
AAGATGATGTATCGGTGATGGACCCCCNCCNCTNTNACAAATTGGAGAGCATGAACTTGNANACACAAGGGAAAAAAAAT
TTGGACCGGCGAGGGTACAGAAAGCTCCTGTTCGACTGCGTAAGTGAATGCCTGGAGACGAGACGTCTCACATACTTCNG
GGCAGGATATGCAGCATGGAGCAAAGGGATGGCAGCGATGAGCAGGGGCATAGAAACTGAAGTCTGCAATGAGATNNGTG
GTTGGAGGAGCATGGGCGAATGGGTGGAGGATGAACTTGTCGACAAGGACATGAGCAGTGGGCTGGGCACATGGGTTGAT
TTTCGGGTGGAGGAGTTCGAGACAGGAGAAGAGTTGGAGAGGGAAATACTGAGCTCACTGGTCGACGAGGTGATCGGCGA
CGTCTTTGTGAGACGACGGGACGGCAGGAGTGTAAATTTGTAATCTGATCTCGAGTGTTGTTGTTTTTGTTCTGTAATTT
TGTTTTGTTAAGTTATATCCATCCCTATTTGATTTGTCGACCAGACTTGATCAAATCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis