Browse Element(s) Details


Os.8881.1.S1_at

Description gb:AU092766
DB_XREF= gi:8527951
DB_XREF=AU092766
CLONE=C53461
TID=Os.8881.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.8881 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0284010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02780Os.37849.1.A1_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02780Os.37849.1.A1_s_at11/115+978262..980782XYPPX repeat family protein, expressed
LOC_Os05g02790OsAffx.14512.1.S1_at11/115+982594..985698kinase interacting protein, putative, expressed
LOC_Os05g02799NANA5+986759..986988NA
LOC_Os05g02810Os.57055.1.S1_at11/115+988676..990898zinc finger family protein, putative, expressed
LOC_Os05g02820Os.23158.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02820Os.3887.1.S1_at11/115+992049..995638protein transport protein, putative, expressed
LOC_Os05g02840OsAffx.14514.1.S1_at11/115+1003784..1005697hypothetical protein
LOC_Os05g02840Os.8881.1.S1_at10/115+1003784..1005697hypothetical protein
LOC_Os05g02850OsAffx.20354.1.S1_at3/115+1008751..1011612retrotransposon protein, putative, unclassified
LOC_Os05g02860NANA5+1012238..1018126retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g02870OsAffx.26700.2.S1_x_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02870OsAffx.26700.2.S1_at11/115+1020122..1022164ABC transporter family protein, putative
LOC_Os05g02880Os.5326.1.S1_a_at11/115+1023905..1027390RNA recognition motif family protein, expressed
LOC_Os05g02890OsAffx.26700.1.S1_s_at11/115+1028123..1030385ABC transporter family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8881.1.S1_at--351--9211Chr05:1004229..1004253 (25 bp)
TCCACGCGCGGGACGGTGCTACCTA
LOC_Os05g02840
Os.8881.1.S1_at--959--10311Chr05:1004296..1004320 (25 bp)
TTTACGAACGCCTCCAGCCGGATAG
LOC_Os05g02840
Os.8881.1.S1_at--176--4931NONE
GCTTGACATCCCCAGGTGAGATATG
NONE
Os.8881.1.S1_at--605--5051Chr05:1004724..1004748 (25 bp)
GCAGCATTGCTGGTGATTCAAGATT
LOC_Os05g02840
Os.8881.1.S1_at--829--5651Chr05:1004754..1004778 (25 bp)
GACTAAAATGAACAAGAGGCCGCTT
LOC_Os05g02840
Os.8881.1.S1_at--61--6231Chr05:1004769..1004793 (25 bp)
GAGGCCGCTTAAGAAATACCATAGA
LOC_Os05g02840
Os.8881.1.S1_at--682--5371Chr05:1004819..1004843 (25 bp)
GAAGACATGCTGCTTTCTGAAGGAA
LOC_Os05g02840
Os.8881.1.S1_at--1081--5331Chr05:1004869..1004893 (25 bp)
GAAGTAGTTAGTTTTGCCTGATGTA
LOC_Os05g02840
Os.8881.1.S1_at--938--4471Chr05:1004884..1004908 (25 bp)
GCCTGATGTATGTAGTCTTTCTTTG
LOC_Os05g02840
Os.8881.1.S1_at--905--4471Chr05:1004927..1004951 (25 bp)
GCCTGTACATGGTTAAGAGTTTGCA
LOC_Os05g02840
Os.8881.1.S1_at--1115--7911Chr05:1004953..1004977 (25 bp)
GGATTGTAGTCCAGATGCTATAAAT
LOC_Os05g02840
Target Sequence 
TCCACGCGCGGGACGGTGCTACCTACCTGCCCGCCGGCCGCTTCTCTCCGTCGAACCGCACCACCGCTTTACGAACGCCT
CCAGCCGGATAGCCCACGGCNGATGCCATCTTCCTCCTCGTGCAGGAGGCCGCTGCTGTCATTCCTCGTGAAGGTGGCTG
CTTGACATCCCCAGGTGAGATATGTGGGGTGCAGCATTGCTGGTGATTCAAGATTAGAAAGACTAAAATGAACAAGAGGC
CGCTTAAGAAATACCATAGAACAACCAAAGACAGAACAATAGAGTGAAGACATGCTGCTTTCTGAAGGAATTTATTCTGG
GAGCTGATGTGTGTNGGAAGTAGTTAGTTTTGCCTGATGTATGTAGTCTTTCTTTGTAATATGTACTATGTATAGCCTGT
ACATGGTTAAGAGTTTGCAAGGATTGTAGTCCAGATGCTATAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis