Browse Element(s) Details


Os.8890.1.S1_at

Description gb:AK061165.1
DB_XREF= gi:32971183
TID=Os.8890.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-A07, full insert sequence.
FL= gb:AK061165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5377011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53720Os.26432.1.S1_at11/113+30753769..30757824protein kinase family protein, putative, expressed
LOC_Os03g53730Os.56988.1.S1_at11/113+30758057..30759117flavodoxin family protein, expressed
LOC_Os03g53740Os.49691.1.S1_at11/113+30759437..30760399expressed protein
LOC_Os03g53750Os.10141.1.S1_at11/113+30760719..30765124Narf, putative, expressed
LOC_Os03g53760OsAffx.25706.1.S1_x_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53760Os.47539.1.S1_s_at11/113+30766042..30772826Helicase associated domain family protein, expressed
LOC_Os03g53770Os.48104.1.A1_s_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53770Os.8890.1.S1_at11/113+30775598..30779649RNA recognition motif family protein, expressed
LOC_Os03g53780Os.27256.1.A1_at6/113+30780849..30782343ammonium transporter AMT2.1, putative
LOC_Os03g53790Os.18244.1.S1_at11/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53790OsAffx.24089.1.S1_x_at1/113+30786058..30788548Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53800Os.9344.1.S1_x_at11/113+30802116..30807733Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53800OsAffx.24089.1.S1_x_at1/113+30802116..30807733Glycosyl hydrolase family 3 N terminal domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8890.1.S1_at--364--5851Chr03:30778005..30778029 (25 bp)
GACCAAAGGCTACATGTTTCTGACA
LOC_Os03g53770
Os.8890.1.S1_at--1155--3271Chr03:30778028..30778052 (25 bp)
CAAAACAATGGCTGCTTTGCTGGCT
LOC_Os03g53770
Os.8890.1.S1_at--262--10291Chr03:30778043..30778067 (25 bp)
TTTGCTGGCTGCAGAGCGCAAGCTA
LOC_Os03g53770
Os.8890.1.S1_at--187--3011Chr03:30778068..30778092 (25 bp)
AATGACACTGGCTCTGCTGTGAAAA
LOC_Os03g53770
Os.8890.1.S1_at--1030--2491Chr03:30778327..30778348 (22 bp)
AACAGGTATGTGTCTGCTGGAACAA
LOC_Os03g53770
Os.8890.1.S1_at--509--2971Chr03:30778357..30778381 (25 bp)
AATGGTGCCTTCAGCAAGGTTGCTA
LOC_Os03g53770
Os.8890.1.S1_at--545--3731Chr03:30778379..30778403 (25 bp)
CTAAGGCTGGTCATGTTGCTGGCTC
LOC_Os03g53770
Os.8890.1.S1_at--91--5351Chr03:30778416..30778440 (25 bp)
GAAGTTCCAAATAGCTGTGTCCAAT
LOC_Os03g53770
Os.8890.1.S1_at--330--8671Chr03:30779416..30779440 (25 bp)
TGTGTATTTCACTGTTCCCATTTTT
LOC_Os03g53770
Os.8890.1.S1_at--334--8171Chr03:30779504..30779528 (25 bp)
GGAACTTTAGAGTCGCCATTCTTTT
LOC_Os03g53770
Os.8890.1.S1_at--1009--5271Chr03:30779616..30779640 (25 bp)
GAATGTCTATGCTTGTGCCATGTTT
LOC_Os03g53770
Target Sequence 
GACCAAAGGCTACATGTTTCTGACAAAACAATGGCTGCTTTGCTGGCTGCAGAGCGCAAGCTAAATGACACTGGCTCTGC
TGTGAAAACCAACAGGTATGTGTCTGCTGGAACAAGCTGGCTAAATGGTGCCTTCAGCAAGGTTGCTAAGGCTGGTCATG
TTGCTGGCTCNAAGAACAAGAGAGAAGTTCCAAATAGCTGTGTCCAATCTAACAGCGAAAGGTCCTGCTGTTGTTGCTTG
AGCTGCTGTGGTCCTGGTTTTGGAAGCTCTTCTTCCTGGGAGAAAAGTCGATCATAAAGCATCGTGCAATCACCTTCACT
CAGAGTGTATCGACAGTGTGGCTTGTAACTGTGTATTTCACTGTTCCCATTTTTTCTTCGGGGAGGTTTTTCCAGTGAGC
CATGTCAGATTTGGTACATAGAGGATCTCATGTTTTTGGAACTTTAGAGTCGCCATTCTTTTCTTTGTAGTGTCGATGTT
AAATTGATTATAGGTGATAGTGATATTCTGGGCCATATGTTGTTGACTCGGTATGGATTATTGGTTATTGAATGTCTATG
CTTGTGCCATGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis