Browse Element(s) Details


Os.8907.1.S1_at

Description gb:AK102132.1
DB_XREF= gi:32987341
TID=Os.8907.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative exodeoxyribonuclease (P0691E06.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033085E02, full insert sequence.
FL= gb:AK102132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5869011/11Apurinic endonuclease-redox protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58640Os.11682.1.S1_at11/111+34224228..34231210Ser/Thr protein phosphatase family protein, expressed
LOC_Os01g58650OsAffx.21682.1.S1_at11/111+34233218..34236440Protease inhibitor/seed storage/LTP family protein
LOC_Os01g58660Os.16752.1.S1_at11/111+34238146..34238836expressed protein
LOC_Os01g58670Os.55436.1.S1_at11/111+34241055..34245283hypothetical protein
LOC_Os01g58670Os.16744.1.S1_at7/111+34241055..34245283hypothetical protein
LOC_Os01g58680Os.33192.1.S1_at10/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58680OsAffx.30558.1.S1_at1/111+34246333..34251495Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58690Os.8907.1.S1_at11/111+34253409..34256653Apurinic endonuclease-redox protein, putative, expressed
LOC_Os01g58700Os.20248.1.S1_at11/111+34257080..34259790expressed protein
LOC_Os01g58710Os.52731.1.S1_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710OsAffx.22699.1.S1_x_at2/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58710Os.45161.1.A1_x_at1/111+34264599..34269847retrotransposon protein, putative, unclassified, expressed
LOC_Os01g58720Os.31845.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58720OsAffx.3761.1.S1_x_at1/111+34270425..34273457hypothetical protein
LOC_Os01g58730Os.33745.1.S1_at11/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58730Os.1385.2.S1_x_at1/111+34276235..34278479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os01g58740Os.26367.1.S1_at11/111+34279035..34282854Glycerol-3-phosphate dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045941biological_processpositive regulation of transcription
GO:0003906molecular_functionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8907.1.S1_at--938--5991Chr01:34255383..34255407 (25 bp)
GAGACCTTAACTGTGCTCGTCAAAG
LOC_Os01g58690
Os.8907.1.S1_at--237--1551Chr01:34255406..34255430 (25 bp)
AGCATTGACATTCACAATCCTCCAG
LOC_Os01g58690
Os.8907.1.S1_at--136--9771Chr01:34255675..34255699 (25 bp)
TAATGCTGTCGGCTATACCTTCTGG
LOC_Os01g58690
Os.8907.1.S1_at--773--6551Chr01:34256249..34256273 (25 bp)
GATTAGATTACTTTCTTGCGTCGGA
LOC_Os01g58690
Os.8907.1.S1_at--1129--8851Chr01:34256313..34256337 (25 bp)
TGATGTATCATTCAGCGACCACAGT
LOC_Os01g58690
Os.8907.1.S1_at--271--3171Chr01:34256340..34256364 (25 bp)
AATTGGCCTGGTACTGAAGCTATAG
LOC_Os01g58690
Os.8907.1.S1_at--170--5991Chr01:34256387..34256411 (25 bp)
GAGACCTTACTGAAGCCAACTGTAC
LOC_Os01g58690
Os.8907.1.S1_at--887--10191Chr01:34256432..34256456 (25 bp)
TATATAAATCTTTGGCCAGCCTGAA
LOC_Os01g58690
Os.8907.1.S1_at--353--10451Chr01:34256478..34256502 (25 bp)
TTAGTCTCCATATCCATTTGCCAGT
LOC_Os01g58690
Os.8907.1.S1_at--105--6011Chr01:34256546..34256570 (25 bp)
GAGACCTTCTGTATATAACGCGATG
LOC_Os01g58690
Os.8907.1.S1_at--204--211Chr01:34256572..34256596 (25 bp)
ATTTGTTTGCTGTCTCTGGGCCAAA
LOC_Os01g58690
Target Sequence 
GAGACCTTAACTGTGCTCGTCAAAGCATTGACATTCACAATCCTCCAGCAAAAACCAAGTCTGCAGGTTTCACAATTGAA
GAGAGAGAGTCATTTGAGACAAACTTTTCTAGCAAAGGCCTTGTGGATACTTTCAGAAAACAGCACCCTAATGCTGTCGG
CTATACCTTCTGGGGTGAAAATCAGCGCATAACCAACAAAGGTTGGCGATTAGATTACTTTCTTGCGTCGGAATCTATTA
CCGACAAGGTTCATGATTCATACATTCTTCCTGATGTATCATTCAGCGACCACAGTCCAATTGGCCTGGTACTGAAGCTA
TAGTATCGGCGAGACTCTAAAATTCGAGACCTTACTGAAGCCAACTGTACATAATCACTTGACAAATGCTTATATAAATC
TTTGGCCAGCCTGAAATGTTGCAAGATGTGGTAGAGTTAGTCTCCATATCCATTTGCCAGTCAATATTACGATTTGTTCT
GTCAGTCTGTCAGGTGTTCGTCCTGAGACCTTCTGTATATAACGCGATGCATTTGTTTGCTGTCTCTGGGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis