Browse Element(s) Details


Os.8908.1.S1_at

Description gb:AK108499.1
DB_XREF= gi:32993708
TID=Os.8908.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-H02, full insert sequence.
FL= gb:AK108499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5332011/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53290OsAffx.24846.1.S1_at11/112+32616045..32616665hypothetical protein
LOC_Os02g53300OsAffx.24847.1.S1_at11/112+32619757..32620246hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53310OsAffx.24848.1.S1_x_at11/112+32632809..32633512hypothetical protein
LOC_Os02g53320Os.8908.1.S1_at11/112+32637656..32638967universal stress protein family protein, expressed
LOC_Os02g53330Os.8607.1.S1_at11/112+32639105..32642569pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family protein, expressed
LOC_Os02g53340Os.8732.1.S1_at11/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53340OsAffx.29203.3.A1_x_at2/112+32642854..32653905cyclic nucleotide-gated ion channel 20, chloroplast precursor, putative, expressed
LOC_Os02g53350Os.51391.1.S1_at11/112+32657558..32658339expressed protein
LOC_Os02g53360OsAffx.24849.1.S1_at10/112+32660474..32662116expressed protein
LOC_Os02g53370OsAffx.3055.1.S1_at11/112+32662375..32663418hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8908.1.S1_at--463--1071Chr02:32638618..32638642 (25 bp)
AGGGCCCTACTTGGAAGTGTTAGCA
LOC_Os02g53320
Os.8908.1.S1_at--126--2631Chr02:32638662..32638686 (25 bp)
AACCTGCCCGGTTACTGTGGTGCGT
LOC_Os02g53320
Os.8908.1.S1_at--908--5071Chr02:32638687..32638711 (25 bp)
GCACCAACCGTGTCAAATGCCTGAT
LOC_Os02g53320
Os.8908.1.S1_at--561--631Chr02:32638715..32638739 (25 bp)
ATGCTACATGGGACTGCTGGAAATT
LOC_Os02g53320
Os.8908.1.S1_at--437--5271Chr02:32638741..32638765 (25 bp)
GAATGCTGGGCTTGTTTTGCTGTTC
LOC_Os02g53320
Os.8908.1.S1_at--593--4731Chr02:32638759..32638783 (25 bp)
GCTGTTCATCCATCTTTTAGCAGAG
LOC_Os02g53320
Os.8908.1.S1_at--669--5431Chr02:32638783..32638807 (25 bp)
GAACCTTCATCTGAGTTGGTGCCAT
LOC_Os02g53320
Os.8908.1.S1_at--318--3211Chr02:32638810..32638834 (25 bp)
CAAGGATTGGTCTCTGGCTCCTGCA
LOC_Os02g53320
Os.8908.1.S1_at--529--3851Chr02:32638830..32638854 (25 bp)
CTGCACTTAGCTTTTCCATGCTATT
LOC_Os02g53320
Os.8908.1.S1_at--208--5251Chr02:32638871..32638895 (25 bp)
GAATCTTCGGTGTATTTCCTTCTGT
LOC_Os02g53320
Os.8908.1.S1_at--128--211Chr02:32638884..32638908 (25 bp)
ATTTCCTTCTGTTACTTCCTATGTA
LOC_Os02g53320
Target Sequence 
AGGGCCCTACTTGGAAGTGTTAGCAACTATGTTGTCAACAATGCAACCTGCCCGGTTACTGTGGTGCGTGCACCAACCGT
GTCAAATGCCTGATTCTATGCTACATGGGACTGCTGGAAATTGGAATGCTGGGCTTGTTTTGCTGTTCATCCATCTTTTA
GCAGAGAACCTTCATCTGAGTTGGTGCCATTGCAAGGATTGGTCTCTGGCTCCTGCACTTAGCTTTTCCATGCTATTGGA
ATGTTATTAAGTTGAATCTTCGGTGTATTTCCTTCTGTTACTTCCTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis