Browse Element(s) Details


Os.8946.1.S1_at

Description gb:AK065458.1
DB_XREF= gi:32975476
TID=Os.8946.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013023D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023D18, full insert sequence.
FL= gb:AK065458.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0581011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05760OsAffx.23212.1.S1_at2/117+2770385..2771359hypothetical protein
LOC_Os07g05770OsAffx.22940.2.S1_s_at10/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_x_at9/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.18.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.2.S1_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.1.S1_s_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_at5/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.31552.2.S1_at1/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05780NANA7+2781567..2783807hypothetical protein
LOC_Os07g05790NANA7+2784882..2786723retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05800OsAffx.28293.1.S1_at10/117+2789750..2790857Lactoylglutathione lyase, putative, expressed
LOC_Os07g05810Os.8946.1.S1_at11/117+2792436..2795656expressed protein
LOC_Os07g05820Os.51287.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_x_at11/117+2795991..2799663expressed protein
LOC_Os07g05830OsAffx.5224.1.S1_at9/117+2800228..2802509ZIM motif family protein, expressed
LOC_Os07g05840OsAffx.28294.2.S1_x_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.2.S1_at11/117+2805240..2808129expressed protein
LOC_Os07g05840Os.10038.1.S1_s_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.3.S1_x_at8/117+2805240..2808129expressed protein
LOC_Os07g05850NANA7+2808505..2812192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05860OsAffx.16109.1.S1_at11/117+2812436..2813389hypothetical protein
LOC_Os07g05870Os.57565.1.S1_at7/117+2817437..2821212expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8946.1.S1_at--739--7611Chr07:2795090..2795114 (25 bp)
GGGAACAACTCATGGGACAACGTTT
LOC_Os07g05810
Os.8946.1.S1_at--1076--7611Chr07:2795116..2795140 (25 bp)
GGGAAACTGAGACGCCTTCTATATA
LOC_Os07g05810
Os.8946.1.S1_at--926--3131Chr07:2795244..2795268 (25 bp)
AATTACCTGCTGGAATCGGGTTGAC
LOC_Os07g05810
Os.8946.1.S1_at--632--2011Chr07:2795282..2795306 (25 bp)
ACTTTCTGAATTTCACGCCGATCTG
LOC_Os07g05810
Os.8946.1.S1_at--265--6411Chr07:2795301..2795325 (25 bp)
GATCTGTGATATATCCGAGTCCTAG
LOC_Os07g05810
Os.8946.1.S1_at--951--3471Chr07:2795350..2795374 (25 bp)
CAGGTACAGTTTTTGCCCAGATGAT
LOC_Os07g05810
Os.8946.1.S1_at--262--6911Chr07:2795456..2795480 (25 bp)
GTATCGTTTTCCTTGTTTTTCATCA
LOC_Os07g05810
Os.8946.1.S1_at--16--10771Chr07:2795499..2795523 (25 bp)
TTGACTGAAGTTTGCCTCGGACGTG
LOC_Os07g05810
Os.8946.1.S1_at--772--7731Chr07:2795534..2795558 (25 bp)
GGTGGTACTTCATCAGGACTGTCAT
LOC_Os07g05810
Os.8946.1.S1_at--280--2291Chr07:2795561..2795585 (25 bp)
AAATGCTTTGGTTTGTTCTCTGTAC
LOC_Os07g05810
Os.8946.1.S1_at--1126--3771Chr07:2795578..2795602 (25 bp)
CTCTGTACATTCCTGGTCACTGAGA
LOC_Os07g05810
Target Sequence 
GGGAACAACTCATGGGACAACGTTTGGGGAAACTGAGACGCCTTCTATATAATGCAAAATTTAAGTTGAACATACAGTTT
ACAAAGGAATTATCATGGCATGAGAGGTTGCATGTCAGCAGTGAATCGAAACGAAGAGTACTGTTGTTAAGGTGAATTAC
CTGCTGGAATCGGGTTGACAGATAGATACTCTACTTTCTGAATTTCACGCCGATCTGTGATATATCCGAGTCCTAGTGGA
CAGGTCCAAGATGTTGTGGGCAGGTACAGTTTTTGCCCAGATGATGCAATGGTATTTAAAGTAAGTATGTTGTATCTTGT
GGGTAATCAATACTGTACCTGGAAGAGTTGGGCAAAATGTATTAATGTATCGTTTTCCTTGTTTTTCATCATAACATATG
GAGTTGATTTTGACTGAAGTTTGCCTCGGACGTGCTGGTGGAGTGGTGGTACTTCATCAGGACTGTCATGCAAATGCTTT
GGTTTGTTCTCTGTACATTCCTGGTCACTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis