Browse Element(s) Details


Os.8947.1.S1_at

Description gb:AK103088.1
DB_XREF= gi:32988297
TID=Os.8947.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118I15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full insert sequence.
FL= gb:AK103088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0591011/11FAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05840NANA3+2913950..2916401monooxygenase, putative, expressed
LOC_Os03g05850OsAffx.915.1.S1_at10/113+2916860..2921160retrotransposon protein, putative, unclassified
LOC_Os03g05860Os.16891.1.S1_at1/113+2921884..2922327monooxygenase, putative
LOC_Os03g05870Os.11072.1.S1_at11/113+2926464..2927396Fe-S metabolism associated domain containing protein, expressed
LOC_Os03g05880Os.16891.1.S1_at2/113+2928630..2931667FAD binding domain containing protein, expressed
LOC_Os03g05890OsAffx.12745.1.S1_at11/113+2934944..2935369hypothetical protein
LOC_Os03g05900Os.16891.1.S1_at11/113+2937423..2939509FAD binding domain containing protein, expressed
LOC_Os03g05910Os.8947.1.S1_at11/113+2940857..2943407FAD binding domain containing protein, expressed
LOC_Os03g05920Os.31992.1.S1_at11/113+2943827..2946397FAD binding domain containing protein, expressed
LOC_Os03g05930OsAffx.24986.1.S1_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05930OsAffx.24986.1.S1_s_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05940NANA3+2949649..2950047hypothetical protein
LOC_Os03g05950OsAffx.3142.1.S1_at11/113+2952426..2953513expressed protein
LOC_Os03g05960NANA3+2954334..2956051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g05970OsAffx.4323.2.S1_s_at11/113+2957857..2958129hypothetical protein
LOC_Os03g05980Os.12189.1.S1_at10/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05980Os.12189.2.S1_x_at2/113+2965130..296838340S ribosomal protein S9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8947.1.S1_at--18--9631Chr03:2943160..2943184 (25 bp)
TCATGATGCCCGACTACGATTGCGG
LOC_Os03g05910
Os.8947.1.S1_at--607--9931Chr03:2943174..2943198 (25 bp)
TACGATTGCGGCACGCTCTCGAGTT
LOC_Os03g05910
Os.8947.1.S1_at--874--1831Chr03:2943186..2943210 (25 bp)
ACGCTCTCGAGTTCCGGTGCTTGTT
LOC_Os03g05910
Os.8947.1.S1_at--512--7311Chr03:2943202..2943226 (25 bp)
GTGCTTGTTGACGTGATTTGGGTTT
LOC_Os03g05910
Os.8947.1.S1_at--337--2851Chr03:2943245..2943269 (25 bp)
AAGTCTGCAACCTGTAATCATATCG
LOC_Os03g05910
Os.8947.1.S1_at--534--3071Chr03:2943260..2943284 (25 bp)
AATCATATCGTCGTGCTGTTTGTGA
LOC_Os03g05910
Os.8947.1.S1_at--677--8871Chr03:2943282..2943306 (25 bp)
TGATGTTTGTCTGTATGTGCTCCGT
LOC_Os03g05910
Os.8947.1.S1_at--910--771Chr03:2943296..2943320 (25 bp)
ATGTGCTCCGTCTGTTTTACTGTTC
LOC_Os03g05910
Os.8947.1.S1_at--58--10471Chr03:2943312..2943336 (25 bp)
TTACTGTTCCGTCACGTGTCAATGA
LOC_Os03g05910
Os.8947.1.S1_at--23--1851Chr03:2943325..2943349 (25 bp)
ACGTGTCAATGATCCCAAACCTGTG
LOC_Os03g05910
Os.8947.1.S1_at--981--1731Chr03:2943343..2943367 (25 bp)
ACCTGTGAAACGCTCCTTTTTGTGT
LOC_Os03g05910
Target Sequence 
TCATGATGCCCGACTACGATTGCGGCACGCTCTCGAGTTCCGGTGCTTGTTGACGTGATTTGGGTTTTGGCCGCCGCCCA
GCTGCAAGTCTGCAACCTGTAATCATATCGTCGTGCTGTTTGTGATGTTTGTCTGTATGTGCTCCGTCTGTTTTACTGTT
CCGTCACGTGTCAATGATCCCAAACCTGTGAAACGCTCCTTTTTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis