Browse Element(s) Details


Os.8959.1.S1_at

Description gb:AK065186.1
DB_XREF= gi:32975204
TID=Os.8959.1
CNT=42
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.8959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002D24, full insert sequence.
FL= gb:AK065186.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4522011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45180Os.7146.1.S1_at11/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180Os.14100.1.S1_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45180OsAffx.22867.1.S1_x_at1/118+28237729..28243122pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os08g45190Os.11841.1.S1_at11/118+28244927..28246078PGR5, putative, expressed
LOC_Os08g45200Os.49919.1.S1_at11/118+28246105..28249178expressed protein
LOC_Os08g45210Os.15717.1.S1_at11/118+28255310..28258236Mpv17/PMP22 family protein, expressed
LOC_Os08g45220Os.8959.1.S1_at11/118+28261140..28266242expressed protein
LOC_Os08g45220Os.40082.1.A1_x_at1/118+28261140..28266242expressed protein
LOC_Os08g45230Os.53483.1.S1_at11/118+28266777..28268025ENTH domain containing protein, expressed
LOC_Os08g45240Os.27448.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45240Os.35508.1.S1_at11/118+28268126..28276070RNA recognition motif family protein, expressed
LOC_Os08g45249NANA8+28281083..28282271NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8959.1.S1_at--289--731Chr08:28265157..28265181 (25 bp)
ATGTAGTCCGGACAGCTGTCACCAA
LOC_Os08g45220
Os.8959.1.S1_at--914--1531Chr08:28265657..28265681 (25 bp)
AGCATCTTCACTGCACATTTCGAGA
LOC_Os08g45220
Os.8959.1.S1_at--1111--2451Chr08:28265706..28265730 (25 bp)
AACACTACAATAGCCTCTTCTGAGA
LOC_Os08g45220
Os.8959.1.S1_at--471--2131Chr08:28265760..28265784 (25 bp)
ACAGGGATCATTCTTCTTGTCTCTA
LOC_Os08g45220
Os.8959.1.S1_at--665--5231Chr08:28265934..28265958 (25 bp)
GAATATGCCACTTACCAGGGACACC
LOC_Os08g45220
Os.8959.1.S1_at--95--5611Chr08:28265953..28265977 (25 bp)
GACACCCTCCTGTATTCGAATGTGA
LOC_Os08g45220
Os.8959.1.S1_at--599--9751Chr08:28266033..28266057 (25 bp)
TAATTTCCATTTTCACACGCTGCGT
LOC_Os08g45220
Os.8959.1.S1_at--1059--3811Chr08:28266052..28266076 (25 bp)
CTGCGTGGCCTTTATGGGATGGTTT
LOC_Os08g45220
Os.8959.1.S1_at--31--8571Chr08:28266071..28266095 (25 bp)
TGGTTTTGACCTTTTTGTAGGCCAT
LOC_Os08g45220
Os.8959.1.S1_at--338--3171Chr08:28266112..28266136 (25 bp)
AATTGTGCTTCTGTGTGGGTCAGCC
LOC_Os08g45220
Os.8959.1.S1_at--417--1671Chr08:28266133..28266157 (25 bp)
AGCCCGGCCGGAATGCAAAACCTTG
LOC_Os08g45220
Target Sequence 
ATGTAGTCCGGACAGCTGTCACCAAAGCATTTGATTTACTACGTGGAGCATATAATGGAAAAATTGTTGGGTTAGTAATA
TCCACAAAGGAGGCTTCACCATCCNTTAGTGGGTCCAGCATCTTCACTGCACATTTCGAGATGGCTAAAAGAGACAAGCC
NAACTAACACTACAATAGCCTCTTCTGAGATACTTGTTAGAAAGAGTTTGGCATGGATTACAGGGATCATTCTTCTTGTC
TCTACTCTCATTGGGGTTTGCTTGCTTATGAATATGCCACTTACCAGGGACACCCTCCTGTATTCGAATGTGAAGATCGA
TTAGATGGAATTAGGAGGGAGGGAGAGAGATTAGCACATTGATGGTTGTAATTTCCATTTTCACACGCTGCGTGGCCTTT
ATGGGATGGTTTTGACCTTTTTGTAGGCCATATATGTTTGACATAAAAATTGTGCTTCTGTGTGGGTCAGCCCGGCCGGA
ATGCAAAACCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis