Browse Element(s) Details


Os.8961.1.S1_s_at

Description gb:AU093050
DB_XREF= gi:8528235
DB_XREF=AU093050
CLONE=C61842
TID=Os.8961.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.8961 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_182248.1 (A.thaliana) putative WRKY-type DNA binding protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4602011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45990Os.54962.1.S1_at10/115+26576315..26578190F-box domain containing protein, expressed
LOC_Os05g46000Os.54425.1.S1_at11/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46000Os.40181.2.S1_s_at2/115+26581348..26583292Ras-related protein Rab7, putative, expressed
LOC_Os05g46010Os.14919.1.S1_at4/115+26586138..26590038hypothetical protein
LOC_Os05g46010OsAffx.29313.1.S1_at1/115+26586138..26590038hypothetical protein
LOC_Os05g46020Os.8961.1.S1_s_at11/115+26599203..26600883WRKY DNA binding domain containing protein, expressed
LOC_Os05g46030Os.50543.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46030OsAffx.27335.1.S1_x_at11/115+26602710..26621489expressed protein
LOC_Os05g46040Os.18094.2.S1_a_at11/115+26621897..26624551Protein phosphatase 2C ABI2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8961.1.S1_s_at--1086--7371Chr05:26600399..26600423 (25 bp)
GTGAGCCCCAGCACGGTGTACTACG
LOC_Os05g46020
Os.8961.1.S1_s_at--658--1011Chr05:26600476..26600500 (25 bp)
AGGTTCTCTCAATTAACCGCGCGCG
LOC_Os05g46020
Os.8961.1.S1_s_at--1047--4551Chr05:26600494..26600518 (25 bp)
GCGCGCGTACGGTTAATTTGATCGA
LOC_Os05g46020
Os.8961.1.S1_s_at--251--7631Chr05:26600532..26600556 (25 bp)
GGGACTTTTCCAATGCTAGCTAGCT
LOC_Os05g46020
Os.8961.1.S1_s_at--949--8751Chr05:26600562..26600586 (25 bp)
TGTAGGTGTTCTGGGCCGGATTCTT
LOC_Os05g46020
Os.8961.1.S1_s_at--832--10551Chr05:26600582..26600606 (25 bp)
TTCTTGATCGAGATAGCAGCCTCTT
LOC_Os05g46020
Os.8961.1.S1_s_at--1012--5071Chr05:26600597..26600621 (25 bp)
GCAGCCTCTTGATTGAGATGCCCAG
LOC_Os05g46020
Os.8961.1.S1_s_at--349--9171Chr05:26600615..26600639 (25 bp)
TGCCCAGATGGGTCATTTTGGATGT
LOC_Os05g46020
Os.8961.1.S1_s_at--243--6831Chr05:26600697..26600721 (25 bp)
GTTTCGATCATTGGAAGGCCGGGCC
LOC_Os05g46020
Os.8961.1.S1_s_at--843--6491Chr05:26600741..26600765 (25 bp)
GATAGTGATCAAATGCTGTGCTGCT
LOC_Os05g46020
Os.8961.1.S1_s_at--770--4772Chr07:21597553..21597572 (20 bp)
GCTGCTGTGTTTCTGTGCTCTTGAG
NONE
Target Sequence 
GTGAGCCCCAGCACGGTGTACTACGCCAGCCAGGACNCCGCCTCCGGCCGCTTCTTCGTCGCCGGCACGCAGCCGCCAGG
TTCTCTCAATTAACCGCGCGCGTACGGTTAATTTGATCGATCGGGTCANCCANGGGACTTTTCCAATGCTAGCTAGCTAA
TAGTGTAGGTGTTCTGGGCCGGATTCTTGATCGAGATAGCAGCCTCTTGATTGAGATGCCCAGATGGGTCATTTTGGATG
TNAGCTGGATCTTTNTTTTCCCCTTTTCTTCTCTCGATCTCTGTCCCGTCCTTNTTTGCCTGTTTCGATCATTGGAAGGC
CGGGCCNGGCCTGGCTGGTTTGCAGCGATAGTGATCAAATGCTGTGCTGCTGTGTTTCTGTGCTCTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8961.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis