Browse Element(s) Details


Os.8971.1.S1_at

Description gb:AF332981.1
DB_XREF= gi:18033449
GEN=HSP101
TID=Os.8971.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8971 (NCBI UniGene Cluster)
DEF=Oryza sativa heat shock protein (HSP101) mRNA, complete cds.
PROD=heat shock protein
FL= gb:AK105433.1 gb:AK100903.1 gb:AK121414.1 gb:AF332981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4434011/11Heat shock protein 101, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44310Os.22280.1.S1_at10/115+25698593..25704536Vesicle-fusing ATPase, putative, expressed
LOC_Os05g44320Os.12402.1.S1_at11/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44320Os.12402.2.S1_x_at10/115+25705605..25710316Periodic tryptophan protein 2 WD repeat associated domain containing protein, expressed
LOC_Os05g44330Os.25529.1.S1_at11/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44330Os.53160.1.S1_at10/115+25714400..25720009DJ-1 family protein, expressed
LOC_Os05g44340Os.8971.1.S1_at11/115+25720401..25723954Heat shock protein 101, putative, expressed
LOC_Os05g44350Os.52818.1.S1_at11/115+25724424..25727740expressed protein
LOC_Os05g44360Os.26690.1.S2_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44360Os.26690.1.S1_a_at11/115+25728005..25733923Oligosaccharyl transferase STT3 subunit homolog, putative, expressed
LOC_Os05g44370OsAffx.27305.1.S1_at10/115+25735041..25736085hypothetical protein
LOC_Os05g44380OsAffx.27306.1.S1_at11/115+25737777..25739599MPPN domain containing protein, expressed
LOC_Os05g44390Os.14123.1.S1_x_at11/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed
LOC_Os05g44390Os.14123.2.S1_at9/115+25740498..25743595peptidyl-tRNA hydrolase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0009408biological_processresponse to heat
GO:0009658biological_processchloroplast organization and biogenesis
GO:0043335biological_processprotein unfolding
GO:0045037biological_processprotein import into chloroplast stroma
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009570cellular_componentchloroplast stroma
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8971.1.S1_at--222--111Chr05:25721056..25721080 (25 bp)
ATTCTGTCTCTGTCCTATGATCCGG
LOC_Os05g44340
Os.8971.1.S1_at--439--711Chr05:25720943..25721064 (25 bp)
ATGATCCGGTTTATGGCGCGAGGCC
LOC_Os05g44340
Os.8971.1.S1_at--480--1611Chr05:25720883..25720907 (25 bp)
AGCTGTCCAAGATGCTGATCCAGGA
LOC_Os05g44340
Os.8971.1.S1_at--253--6391Chr05:25720855..25720879 (25 bp)
GATCGACGAGAACTGCACGGTGTAC
LOC_Os05g44340
Os.8971.1.S1_at--734--5891Chr05:25720806..25720830 (25 bp)
GAGCTGGCCTACAGGGTGGACAACC
LOC_Os05g44340
Os.8971.1.S1_at--1057--1451Chr05:25720751..25720775 (25 bp)
AGAAGTCGGACATCCTCATCCAGGT
LOC_Os05g44340
Os.8971.1.S1_at--1133--4151Chr05:25720580..25720604 (25 bp)
CGCCGATCGAGCTGTGTGAATGAAT
LOC_Os05g44340
Os.8971.1.S1_at--762--7711Chr05:25720552..25720576 (25 bp)
GGGTGTCTCCGTTGAATAAGCTGTG
LOC_Os05g44340
Os.8971.1.S1_at--1011--6811Chr05:25720518..25720542 (25 bp)
GTTTTTCCGATGATGCCTTTTTGTG
LOC_Os05g44340
Os.8971.1.S1_at--1059--5331Chr05:25720494..25720518 (25 bp)
GAAGTTGTTGTTCTGCTAAGACGAC
LOC_Os05g44340
Os.8971.1.S1_at--1121--4831Chr05:25720480..25720504 (25 bp)
GCTAAGACGACTTTCTTTTGTGAAA
LOC_Os05g44340
Target Sequence 
ATTCTGTCTCTGTCCTATGATCCGGTTTATGGCGCGAGGCCGATCAGGAGGTGGATCGAGAAGAGGGTGGTGACGCAGCT
GTCCAAGATGCTGATCCAGGAGGAGATCGACGAGAACTGCACGGTGTACATCGACGCGGCGCCGCACAAGGACGAGCTGG
CCTACAGGGTGGACAACCGCGGGGGGTTGGTGAACGCCGAGACGGGGCAGAAGTCGGACATCCTCATCCAGGTGCCCAAC
GGCGCCGCCACCGGGAGCGACGCCGCGCAGGCGGTGAAGAAGATGAGGATCATGGAGGACGAGGACGGCATGGACGAAGA
GTAGTAAGTAGTAGAGCGCGTATGTGCGTGTTGCGCCCCCGGGCAGAGGCAGAGGAGGGCGCCGATCGAGCTGTGTGAAT
GAATGTGGGGTGTCTCCGTTGAATAAGCTGTGAAATATGGTGTTTTTCCGATGATGCCTTTTTGTGAAGTTGTTGTTCTG
CTAAGACGACTTTCTTTTGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis