Browse Element(s) Details


Os.8999.3.S1_x_at

Description gb:AK062270.1
DB_XREF= gi:32972288
TID=Os.8999.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8999 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for aldolase C-1, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-A06, full insert sequence.
FL= gb:AK062270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6786010/11Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os05g333802/11Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os10g080221/11Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67810Os.26884.1.S1_a_at11/111+39735162..39737206transposon protein, putative, unclassified, expressed
LOC_Os01g67820Os.53052.1.S1_at9/111+39738039..39739911Exo70 exocyst complex subunit family protein, expressed
LOC_Os01g67830Os.51723.1.S1_at11/111+39741652..39745466B3 DNA binding domain containing protein, expressed
LOC_Os01g67840NANA1+39750176..39753880hypothetical protein
LOC_Os01g67850Os.13901.1.S1_at11/111+39755916..39759273Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g67860Os.8999.3.S1_x_at10/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67860Os.8999.1.S1_at8/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein
LOC_Os01g67880OsAffx.23963.1.S1_x_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67880Os.54646.1.S1_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67890OsAffx.2430.1.S1_at11/111+39786448..39787899SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006098biological_processpentose-phosphate shunt
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8999.3.S1_x_at--386--2891Chr01:39761530..39761554 (25 bp)
AAGGGTATCCTTGCTGCAGATGAGT
LOC_Os01g67860
Os.8999.3.S1_x_at--978--5031Chr01:39761515..39761539 (25 bp)
GCAGATGAGTCCACTGGCACCATTG
LOC_Os01g67860
Os.8999.3.S1_x_at--672--5452Chr05:19524654..19524677 (24 bp)
GAACGTTGAGGAGAACCGCCGCTCT
LOC_Os05g33380
Os.8999.3.S1_x_at--524--1751Chr01:39761397..39761421 (25 bp)
ACCTAAGTGGTGTGATCCTCTTCGA
LOC_Os01g67860
Os.8999.3.S1_x_at--206--6971Chr01:39761280..39761304 (25 bp)
GTACCGTTGAGGTTGCCGGCACCAA
LOC_Os01g67860
Os.8999.3.S1_x_at--728--6291Chr01:39761230..39761254 (25 bp)
GATGATCTTGGCAAGCGTTGCGCCA
LOC_Os01g67860
Os.8999.3.S1_x_at--719--9133Chr05:19524904..19525318 (25 bp)
TGCGCCAAGTACTACGAGGCCGGTG
LOC_Os05g33380
Os.8999.3.S1_x_at--221--531Chr01:39761138..39761162 (25 bp)
ATCGCAGCTTTCCATTGACCTGAAT
LOC_Os01g67860
Os.8999.3.S1_x_at--561--5271Chr01:39761117..39761141 (25 bp)
GAATGCTCAGGGTCTTGCTCGCTAT
LOC_Os01g67860
Os.8999.3.S1_x_at--922--8711Chr01:39761057..39761081 (25 bp)
TGTCGAGCCTGAGATCCTTGTCGAT
LOC_Os01g67860
Os.8999.3.S1_x_at--719--6231NONE
GATGGCTCTCTACCTGTCATCGGTA
NONE
Target Sequence 
AAGGGTATCCTTGCTGCAGATGAGTCCACTGGCACCATTGGCAAGCGCTTTGCCAGCATCAATGTCGAGAACGTTGAGGA
GAACCGCCGCTCTCTCCGCGAGCTGCTCTTCACCACCCCTGGTGCCCTCCAGCACCTAAGTGGTGTGATCCTCTTCGAGG
AGACCCTGTACCAGAAGACCAAGGACGGCAAGCCCTTCGTCGATGTCCTCAAGGAGGGTGGTGTCCTCCCTGGCATCAAG
GTTGACAAGGGTACCGTTGAGGTTGCCGGCACCAACAAAGAGACCACCACCCAGGGCCACGATGATCTTGGCAAGCGTTG
CGCCAAGTACTACGAGGCCGGTGCCCGCTTCGCCAAGTGGCGTGCTGTCCTCAAGATTGGCCCCAACGAGCCATCGCAGC
TTTCCATTGACCTGAATGCTCAGGGTCTTGCTCGCTATGCCATCATCTGCCAGGAGAACGGGCTGGTGCCGATTGTCGAG
CCTGAGATCCTTGTCGATGGCTCTCTACCTGTCATCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8999.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis