Browse Element(s) Details

Os.9043.1.S1_at

Description

gb:AK073063.1
DB_XREF= gi:32983086
TID=Os.9043.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribonucleoside-diphosphate reductase (OSJNBa0038F22.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022H19, full insert sequence.
FL= gb:AK073063.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03720	11/11	Ribonucleoside-diphosphate reductase small chain, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03682	Os.4465.1.S1_a_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03682	Os.4465.1.S1_s_at	11/11	6	+	1444558..1447649	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os06g03690	Os.5600.1.S1_s_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03690	OsAffx.27444.1.S1_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03700	Os.34161.2.S1_x_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_a_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03710	Os.31950.1.S1_at	11/11	6	+	1464501..1467594	GRAS family transcription factor containing protein, expressed
LOC_Os06g03720	Os.9043.1.S1_at	11/11	6	+	1469866..1471141	Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_x_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.2.S1_x_at	7/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03750	Os.44810.1.S1_at	11/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed
LOC_Os06g03750	Os.52574.2.S1_x_at	1/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed
LOC_Os06g03760	Os.4272.1.S1_a_at	11/11	6	+	1484975..1489635	LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770	Os.10814.1.S1_a_at	11/11	6	+	1491885..1501584	ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009186	biological_process	deoxyribonucleoside diphosphate metabolism
GO:0009259	biological_process	ribonucleotide metabolism
GO:0005971	cellular_component	ribonucleoside-diphosphate reductase complex
GO:0004748	molecular_function	ribonucleoside-diphosphate reductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9043.1.S1_at--151--145	1	Chr06:1470544..1470568 (25 bp)	AGAAGCGCGGACTCATGCCGGGCCT	LOC_Os06g03720
Os.9043.1.S1_at--259--187	1	Chr06:1470658..1470682 (25 bp)	ACGAGTCACGCGTCCAGGAGATCGT	LOC_Os06g03720
Os.9043.1.S1_at--1028--193	1	Chr06:1470940..1470964 (25 bp)	ACGGCGGCGCTTCTTGCAACCATGT	LOC_Os06g03720
Os.9043.1.S1_at--152--1075	1	Chr06:1470953..1470977 (25 bp)	TTGCAACCATGTCTTCAGCATCGAC	LOC_Os06g03720
Os.9043.1.S1_at--1060--497	1	Chr06:1470970..1470994 (25 bp)	GCATCGACGAGGACTTCTGATCACA	LOC_Os06g03720
Os.9043.1.S1_at--339--947	1	Chr06:1470985..1471009 (25 bp)	TCTGATCACATCGACTGCCATAGTA	LOC_Os06g03720
Os.9043.1.S1_at--918--557	1	Chr06:1471021..1471045 (25 bp)	GAAATACATGTTCTCCCAAAGTGTT	LOC_Os06g03720
Os.9043.1.S1_at--704--379	1	Chr06:1471033..1471057 (25 bp)	CTCCCAAAGTGTTCGTATGGTTTCT	LOC_Os06g03720
Os.9043.1.S1_at--1099--671	1	Chr06:1471068..1471092 (25 bp)	GTTCTGGTTTGACATGTACTCCTGT	LOC_Os06g03720
Os.9043.1.S1_at--267--567	1	Chr06:1471078..1471102 (25 bp)	GACATGTACTCCTGTAATGAATCAA	LOC_Os06g03720
Os.9043.1.S1_at--638--309	1	Chr06:1471117..1471141 (25 bp)	AATACATCAACTGGTCATTGCCTGT	LOC_Os06g03720

Target Sequence

AGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCC
TGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGA
GAGGGAGNTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTC
GTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCAT
CTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAGGCGTCCGTAATGTCCAGCCTCAACG
GCGGCGCTTCTTGCAACCATGTCTTCAGCATCGACGAGGACTTCTGATCACATCGACTGCCATAGTAGTATTAAAGTAGA
AATACATGTTCTCCCAAAGTGTTCGTATGGTTTCTTGTTTTATTTGTTCTGGTTTGACATGTACTCCTGTAATGAATCAA
GTAAAAAGTTTCTCAATACATCAACTGGTCATTGCCTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis