Browse Element(s) Details


Os.9069.1.S1_at

Description gb:AK109373.2
DB_XREF= gi:42821689
TID=Os.9069.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0509B06.6 (P0509B06.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G03, full insert sequence.
FL= gb:AK100800.1 gb:AK069242.1 gb:AK060091.1 gb:AK109373.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0832011/11Auxin-induced protein 22B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08270Os.50272.1.S1_s_at11/111+4048683..4054510aminotransferase class I and II family protein, putative, expressed
LOC_Os01g08280Os.25067.1.S1_a_at11/111+4056312..4059990expressed protein
LOC_Os01g08290Os.25067.2.S1_at7/111+4060870..4063121integral membrane family protein, putative, expressed
LOC_Os01g08300OsAffx.23160.1.S1_s_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.51295.1.S1_at11/111+4063149..4064121expressed protein
LOC_Os01g08300Os.46584.1.S1_x_at1/111+4063149..4064121expressed protein
LOC_Os01g08310Os.55822.1.A1_at10/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.1.S1_x_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08310OsAffx.10962.2.S1_at7/111+4065438..4067133Protein phosphatase 2A regulatory B subunit containing protein, expressed
LOC_Os01g08320Os.9069.1.S1_at11/111+4070718..4073240Auxin-induced protein 22B, putative, expressed
LOC_Os01g08330NANA1+4078118..4079482Eukaryotic aspartyl protease family protein
LOC_Os01g08340Os.54294.1.S1_at11/111+4087875..4091623zinc finger family protein, putative, expressed
LOC_Os01g08350NANA1+4092658..4093051ATP synthase alpha chain, mitochondrial, putative
LOC_Os01g08360OsAffx.10833.1.S1_at5/111+4096185..4098684hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9069.1.S1_at--404--6871Chr01:4071286..4071310 (25 bp)
GTTTGTGGAAACTTGCCAGCGCCTT
LOC_Os01g08320
Os.9069.1.S1_at--774--6211Chr01:4071126..4071267 (25 bp)
GAGGCTGTCAACTTAGCACCAAGAG
LOC_Os01g08320
Os.9069.1.S1_at--986--1391Chr01:4071052..4071076 (25 bp)
AGAAAGTGGAAGCTTTGCCCCGCCG
LOC_Os01g08320
Os.9069.1.S1_at--240--6291Chr01:4071028..4071052 (25 bp)
GATGTTCGCCCACGTGTGATATGAA
LOC_Os01g08320
Os.9069.1.S1_at--742--5491Chr01:4071006..4071030 (25 bp)
GAACATGTACAGTTGTCTCCTACTA
LOC_Os01g08320
Os.9069.1.S1_at--179--6951Chr01:4070942..4070966 (25 bp)
GTAGTTTCGTTACTCGTCTGTAGTC
LOC_Os01g08320
Os.9069.1.S1_at--5--9871Chr01:4070878..4070902 (25 bp)
TACACCTACAGTTTGTCTCTTTATG
LOC_Os01g08320
Os.9069.1.S1_at--452--2431Chr01:4070833..4070857 (25 bp)
AAAACCGATGTTCTTTGCTGCGGCT
LOC_Os01g08320
Os.9069.1.S1_at--4--9351Chr01:4070809..4070833 (25 bp)
TCGCGTGTCGTCAGGCTATATGCAG
LOC_Os01g08320
Os.9069.1.S1_at--191--9051Chr01:4070789..4070813 (25 bp)
TGCAGTTTTTTGTCGCACCATAGGC
LOC_Os01g08320
Os.9069.1.S1_at--885--451Chr01:4070757..4070781 (25 bp)
ATCTCTGGCCTTATACTTTCGTAAA
LOC_Os01g08320
Target Sequence 
GTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGCACCAAGAGCCGCTCAATGAG
GCATTCCCGGTGCCCATGACCGTGTGGTTGGATTGAAAGAAAGTGGAAGCTTTGCCCCGCCGATGTTCGCCCACGTGTGA
TATGAACATGTACAGTTGTCTCCTACTACTTTTGGTTCCTTGATGATGCTGAGTTGAGAAAAAGGTTGTAGTTTCGTTAC
TCGTCTGTAGTCTCTCCATATATAGATAATGAAGCACTGAAGCTTGAAATATACACCTACAGTTTGTCTCTTTATGAATA
AGACCATATACGCAAAAAAACCGATGTTCTTTGCTGCGGCTCGCGTGTCGTCAGGCTATATGCAGTTTTTTGTCGCACCA
TAGGCGATGGACATCTCTGGCCTTATACTTTCGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis