Browse Element(s) Details


Os.9073.1.S1_at

Description gb:AK109278.1
DB_XREF= gi:32994487
TID=Os.9073.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1100D10.32 (B1100D10.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-B02, full insert sequence.
FL= gb:AK109278.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5747011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57410Os.26876.1.S1_at11/111+33509437..33512989Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os01g57420Os.14427.1.S2_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57420Os.14427.1.S1_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g57450Os.34258.1.S1_at10/111+33525414..33528581universal stress protein, putative, expressed
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed
LOC_Os01g57470Os.9073.1.S1_at11/111+33534501..33535541EF hand family protein, expressed
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9073.1.S1_at--308--571Chr01:33535074..33535098 (25 bp)
ATCCAATCCAAGCACCCGGTTGAGC
LOC_Os01g57470
Os.9073.1.S1_at--567--7911Chr01:33535057..33535081 (25 bp)
GGTTGAGCTGCCGTTTTCTGTGATC
LOC_Os01g57470
Os.9073.1.S1_at--494--10391Chr01:33535044..33535068 (25 bp)
TTTTCTGTGATCTCCGTTGCTCAAT
LOC_Os01g57470
Os.9073.1.S1_at--667--10691Chr01:33535028..33535052 (25 bp)
TTGCTCAATCTAGTCCGTCGTACGG
LOC_Os01g57470
Os.9073.1.S1_at--773--5171Chr01:33534863..33534887 (25 bp)
GCAAGATCACCTTCCGGAGCCTGAA
LOC_Os01g57470
Os.9073.1.S1_at--115--4951Chr01:33534682..33534706 (25 bp)
GCATAGGGCGTTCCAGTGTTGACAT
LOC_Os01g57470
Os.9073.1.S1_at--48--9771Chr01:33534658..33534682 (25 bp)
TAATCTGATCGGTGCTTGTTAGCTA
LOC_Os01g57470
Os.9073.1.S1_at--1074--9011Chr01:33534575..33534599 (25 bp)
TGCATTTTATTTCCCCTAACGAAGC
LOC_Os01g57470
Os.9073.1.S1_at--998--9811Chr01:33534549..33534573 (25 bp)
TAACAGCCTGACAACTCATGCTACT
LOC_Os01g57470
Os.9073.1.S1_at--138--9091Chr01:33534531..33534555 (25 bp)
TGCTACTCCCAGTATTCACATTTTG
LOC_Os01g57470
Os.9073.1.S1_at--740--10751Chr01:33534509..33534533 (25 bp)
TTGACATGCAAATCACTACACCCAC
LOC_Os01g57470
Target Sequence 
ATCCAATCCAAGCACCCGGTTGAGCTGCCGTTTTCTGTGATCTCCGTTGCTCAATCTAGTCCGTCGTACGGCATCGCCAT
GGGCGCCGCCGACAAGGGCACCGGCGTGCAGTTCGAGGACTTCCTGCCGTCGATGGCGAGGAAGCTGGGCGTGGAGGGGC
TGATCGAGGAGCTCTGCAAGGGGTTCGAGCTGCTCATGGACCCCGGCGCCGGCAAGATCACCTTCCGGAGCCTGAAGAGG
AACGCGGCGATGCTAGGGCTCGGCGAGCTCCGGGACGACGAGCTGTCGGAGATGATGAGGGAAGGGGACCTCGACGGGGA
CGGCGCGCTGGACCAGATGGAGTTCTGCGTCCTCATGGTCAGACTCAGCCCCGAGCTGATGCAGGATGAGTCGCATAGGG
CGTTCCAGTGTTGACATAATCTGATCGGTGCTTGTTAGCTAGTGGAATGCAACATTATAATACAGTGAGCGTTTTGAGGA
TTTGTCGATAGTGTGATTATGCATTTTATTTCCCCTAACGAAGCATAACAGCCTGACAACTCATGCTACTCCCAGTATTC
ACATTTTGACATGCAAATCACTACACCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis