Browse Element(s) Details


OsAffx.21580.1.S1_at

Description tigr:9629.m05634
TID=OsAffx.21580.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=S-locus glycoprotein family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5751011/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed
LOC_Os01g57470Os.9073.1.S1_at11/111+33534501..33535541EF hand family protein, expressed
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed
LOC_Os01g57520NANA1+33561093..33561932hypothetical protein
LOC_Os01g57530OsAffx.11636.1.S1_at11/111+33563967..33564182hypothetical protein
LOC_Os01g57540OsAffx.23824.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540Os.56252.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540OsAffx.23824.1.S1_x_at10/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57550Os.27073.1.S1_at11/111+33571590..33575256nodulation protein, putative, expressed
LOC_Os01g57560Os.38421.1.S1_at11/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57560OsAffx.23824.1.S1_x_at1/111+33575726..33583561S-locus glycoprotein family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21580.1.S1_at--425--3991Chr01:33558115..33558139 (25 bp)
CGTGTTCTCCATGAAATCCGATGTC
LOC_Os01g57510
OsAffx.21580.1.S1_at--1081--291Chr01:33558141..33558165 (25 bp)
ATAGCTTTGGTGTCCTAGTGCTAGA
LOC_Os01g57510
OsAffx.21580.1.S1_at--1116--7311Chr01:33558158..33558182 (25 bp)
GTGCTAGAGATCGTCACTGGCAGAC
LOC_Os01g57510
OsAffx.21580.1.S1_at--7--1011Chr01:33558190..33558214 (25 bp)
AGGATTCTACGAAGCCGAGCTCGAT
LOC_Os01g57510
OsAffx.21580.1.S1_at--652--2631Chr01:33558218..33558332 (25 bp)
AACCTCCTCAGATACTCATGGTTGC
LOC_Os01g57510
OsAffx.21580.1.S1_at--423--971Chr01:33558347..33558371 (25 bp)
AGGAGCGTTGATTTACTGGACCAGC
LOC_Os01g57510
OsAffx.21580.1.S1_at--1107--8251Chr01:33558380..33558404 (25 bp)
GGCAGCTTCGACTACAGCGAGGTGT
LOC_Os01g57510
OsAffx.21580.1.S1_at--937--6671Chr01:33558419..33558443 (25 bp)
GTTGCTCTCCTGTGTGTTGAAGTGC
LOC_Os01g57510
OsAffx.21580.1.S1_at--82--5311Chr01:33558437..33558461 (25 bp)
GAAGTGCAACCTAGAAACAGACCGT
LOC_Os01g57510
OsAffx.21580.1.S1_at--4--4051Chr01:33558459..33558483 (25 bp)
CGTTGATGTCTTCGGTCGTTATGAT
LOC_Os01g57510
OsAffx.21580.1.S1_at--696--2071Chr01:33558534..33558558 (25 bp)
ACATTGGGAGGCACGCGTCAGACAC
LOC_Os01g57510
Target Sequence 
CGTGTTCTCCATGAAATCCGATGTCTATAGCTTTGGTGTCCTAGTGCTAGAGATCGTCACTGGCAGACGGAACCGAGGAT
TCTACGAAGCCGAGCTCGATCTCAACCTCCTCAGATACTCATGGTTGCTGTGGAAAGAAGGCAGGAGCGTTGATTTACTG
GACCAGCTGTTGGGCGGCAGCTTCGACTACAGCGAGGTGTTGAGATGCATCCAGGTTGCTCTCCTGTGTGTTGAAGTGCA
ACCTAGAAACAGACCGTTGATGTCTTCGGTCGTTATGATGCTAGCCAGTGAGAATGCTACATTGCCGGAACCAAATGAGC
CTGGAGTAAACATTGGGAGGCACGCGTCAGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis