Browse Element(s) Details


Os.56252.1.S1_at

Description gb:AK109693.1
DB_XREF= gi:32994902
TID=Os.56252.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E09, full insert sequence.
FL= gb:AK109693.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5754011/11Serine/threonine-protein kinase receptor precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed
LOC_Os01g57520NANA1+33561093..33561932hypothetical protein
LOC_Os01g57530OsAffx.11636.1.S1_at11/111+33563967..33564182hypothetical protein
LOC_Os01g57540OsAffx.23824.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540Os.56252.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540OsAffx.23824.1.S1_x_at10/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57550Os.27073.1.S1_at11/111+33571590..33575256nodulation protein, putative, expressed
LOC_Os01g57560Os.38421.1.S1_at11/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57560OsAffx.23824.1.S1_x_at1/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57570Os.15322.1.S1_at11/111+33591209..33595292NADPH-dependent FMN reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56252.1.S1_at--629--6151Chr01:33570191..33570215 (25 bp)
GAGGCTAGGTAGTCTGAAACAGTAA
LOC_Os01g57540
Os.56252.1.S1_at--591--2391Chr01:33570208..33570232 (25 bp)
AACAGTAAATTCTCCTTGCTCTAAC
LOC_Os01g57540
Os.56252.1.S1_at--632--3811Chr01:33570219..33570243 (25 bp)
CTCCTTGCTCTAACAGTAAGTCTGT
LOC_Os01g57540
Os.56252.1.S1_at--924--8751Chr01:33570241..33570265 (25 bp)
TGTAGTTCTGTATAGCGAGTCAAAA
LOC_Os01g57540
Os.56252.1.S1_at--448--1171Chr01:33570258..33570282 (25 bp)
AGTCAAAACCTCATGCAAAGCTCTG
LOC_Os01g57540
Os.56252.1.S1_at--761--2351Chr01:33570274..33570298 (25 bp)
AAAGCTCTGCTGAAACTAGTTCACT
LOC_Os01g57540
Os.56252.1.S1_at--380--3711Chr01:33570289..33570313 (25 bp)
CTAGTTCACTTATAACGAGTCTTGA
LOC_Os01g57540
Os.56252.1.S1_at--689--7051Chr01:33570320..33570344 (25 bp)
GTAAGTTGTAAGACCACATTAGACA
LOC_Os01g57540
Os.56252.1.S1_at--257--6671Chr01:33570356..33570380 (25 bp)
GTTGCAATGCACTAGTTGTAGGTTA
LOC_Os01g57540
Os.56252.1.S1_at--777--2071Chr01:33570384..33570408 (25 bp)
ACATTGTCTGGCGTGTGATGGAGCC
LOC_Os01g57540
Os.56252.1.S1_at--188--6251Chr01:33570400..33570424 (25 bp)
GATGGAGCCGACAAAACTGGTTAAA
LOC_Os01g57540
Target Sequence 
GAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAAGTCTGTAGTTCTGTATAGCGAGTCAAAACCTCA
TGCAAAGCTCTGCTGAAACTAGTTCACTTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCA
TGATTGTTGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACTGGTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis