Browse Element(s) Details


Os.15322.1.S1_at

Description gb:AK059820.1
DB_XREF= gi:32969838
TID=Os.15322.1
CNT=54
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 1,4-benzoquinone reductase (B1070A12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-D02, full insert sequence.
FL= gb:AK059820.1 gb:AK104580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5757011/11NADPH-dependent FMN reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57540OsAffx.23824.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540Os.56252.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540OsAffx.23824.1.S1_x_at10/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57550Os.27073.1.S1_at11/111+33571590..33575256nodulation protein, putative, expressed
LOC_Os01g57560Os.38421.1.S1_at11/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57560OsAffx.23824.1.S1_x_at1/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57570Os.15322.1.S1_at11/111+33591209..33595292NADPH-dependent FMN reductase family protein, expressed
LOC_Os01g57580OsAffx.27283.1.S1_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g57580OsAffx.27283.2.S1_s_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g57580OsAffx.27283.2.S1_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009733biological_processresponse to auxin stimulus
GO:0010181molecular_functionFMN binding
GO:0016655molecular_functionoxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15322.1.S1_at--917--9831Chr01:33594694..33594718 (25 bp)
TACACCTTCGGTGCCAAGATGTTTA
LOC_Os01g57570
Os.15322.1.S1_at--482--8691Chr01:33594906..33594930 (25 bp)
TGTCCCTACGCACAACATCGTGAGG
LOC_Os01g57570
Os.15322.1.S1_at--187--6211Chr01:33594927..33594951 (25 bp)
GAGGCATTTCATACAGCTCCAAACC
LOC_Os01g57570
Os.15322.1.S1_at--392--3451Chr01:33594963..33594987 (25 bp)
CAGTCAATAGCTTGGTCTCTTCTTT
LOC_Os01g57570
Os.15322.1.S1_at--171--9531Chr01:33594978..33595002 (25 bp)
TCTCTTCTTTTGTGGTGTTTCTCGA
LOC_Os01g57570
Os.15322.1.S1_at--963--8771Chr01:33594993..33595017 (25 bp)
TGTTTCTCGATGCTATGTGGCTTCT
LOC_Os01g57570
Os.15322.1.S1_at--65--10111Chr01:33595006..33595030 (25 bp)
TATGTGGCTTCTCCCTGGAACTTCT
LOC_Os01g57570
Os.15322.1.S1_at--1095--8511Chr01:33595021..33595045 (25 bp)
TGGAACTTCTCATTGCCGTACGCAT
LOC_Os01g57570
Os.15322.1.S1_at--970--9171Chr01:33595034..33595058 (25 bp)
TGCCGTACGCATGATATGATTCTGT
LOC_Os01g57570
Os.15322.1.S1_at--339--731Chr01:33595049..33595073 (25 bp)
ATGATTCTGTTCTACGCTTTGGTCA
LOC_Os01g57570
Os.15322.1.S1_at--292--4291Chr01:33595177..33595201 (25 bp)
CCTGCCTTTTCTTTTGCGAAGCTAA
LOC_Os01g57570
Target Sequence 
TACACCTTCGGTGCCAAGATGTTTAACATGGGAGAAGTTCAGGGGGGCAGCCCGTACGGCGCCGGCACCTTTGCCGCCGA
CGGCTCGAGGTGGCCGACGGAAATGGAGCTGGAGCACGCCTTCCACCAGGGGAAGTACTTCGCAGGCATCGCGAAGAAGC
TCAAGGGGTCCGCTTGAGATCTCCATTGGGCAAATTCAATTGGGCGTGTGCGTGTCCCTACGCACAACATCGTGAGGCAT
TTCATACAGCTCCAAACCATACCGACATACAGTCAATAGCTTGGTCTCTTCTTTTGTGGTGTTTCTCGATGCTATGTGGC
TTCTCCCTGGAACTTCTCATTGCCGTACGCATGATATGATTCTGTTCTACGCTTTGGTCAGCTGGTTGTAATTTGGAGTA
AGTTCTGTTATTGTATTATTGGTTCCCCCATGATATATATTGATTATTGTACGGGGAGATCTNTTGGTTGCCATTCCGTC
ATTCCTGCCTTTTCTTTTGCGAAGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis