Browse Element(s) Details


OsAffx.27283.2.S1_s_at

Description tigr:9629.m05643
TID=OsAffx.27283.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5758011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57550Os.27073.1.S1_at11/111+33571590..33575256nodulation protein, putative, expressed
LOC_Os01g57560Os.38421.1.S1_at11/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57560OsAffx.23824.1.S1_x_at1/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57570Os.15322.1.S1_at11/111+33591209..33595292NADPH-dependent FMN reductase family protein, expressed
LOC_Os01g57580OsAffx.27283.1.S1_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g57580OsAffx.27283.2.S1_s_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g57580OsAffx.27283.2.S1_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27283.2.S1_s_at--112--4491Chr01:33600573..33600597 (25 bp)
GCCGGCGACGCATAGCATCACGACG
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--646--4951Chr01:33600564..33600588 (25 bp)
GCATAGCATCACGACGTCGTTCGGG
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--150--7671Chr01:33600541..33600565 (25 bp)
GGGATTACCAGCACTCGGCAAGCTA
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--144--7391Chr01:33600500..33600524 (25 bp)
GTGATGCAGTTCTCGCAGACGCCGA
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--906--1291Chr01:33600448..33600472 (25 bp)
AGATGCAGTTCTTGTCCGGCAGCTA
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--183--5071Chr01:33600387..33600411 (25 bp)
GCAGCTTCTCTTGCAGGCCATGCAG
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--691--2651Chr01:33600359..33600383 (25 bp)
AAGCCTAGCTGCAGCTCTAACGCTA
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--145--3871Chr01:33599364..33599388 (25 bp)
CTGAGAGCACGAAGGACGCAGAGCA
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--327--1371Chr01:33599345..33599369 (25 bp)
AGAGCAGCCGAAGCCGGATCTGCGC
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--723--4271Chr01:33599312..33599336 (25 bp)
CCTGTGCCTTGTGCCGGTGGCAAGC
LOC_Os01g57580
OsAffx.27283.2.S1_s_at--1052--3231Chr01:33599292..33599316 (25 bp)
CAAGCACTTATACGGTGGCGAGCGA
LOC_Os01g57580
Target Sequence 
GCCGGCGACGCATAGCATCACGACGTCGTTCGGGGATTACCAGCACTCGGCAAGCTACGACGCCGCGGCGGCGGTGATGC
AGTTCTCGCAGACGCCGAGGGCGCCCTCGTTGCCGGCGGCTGCCCAGATGCAGTTCTTGTCCGGCAGCTACCAGCTGCCT
TTCGGCGGTGCGCCGCCGCTGCCGTCGCAGCTTCTCTTGCAGGCCATGCAGCCCAAGCCTAGCTGCAGCTCTAACGCTAA
CACCCTCCTGGCGAAGGTGAGGAAAGAGAAGCTAGGGGACAGAATCACTGCGCTCCAGCAACTAGTCTCGCCTTTTGGAA
AGACTGATACCGCATCGGTTCTTCACGAGGCCATCGAATACATCAAGTTCCTTCACGAACAAGTTGCGTCTTTGAGCTCT
CCGTACTTGAAGAATGGGAACCCATTGCAGCACTTCCAGCAGAAGGGTTCTGAGAGCACGAAGGACGCAGAGCAGCCGAA
GCCGGATCTGCGCAGCCGAGGCCTGTGCCTTGTGCCGGTGGCAAGCACTTATACGGTGGCGAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27283.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis