Browse Element(s) Details


Os.27073.1.S1_at

Description gb:AK067527.1
DB_XREF= gi:32977545
TID=Os.27073.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109O21, full insert sequence.
FL= gb:AK067527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5755011/11nodulation protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed
LOC_Os01g57520NANA1+33561093..33561932hypothetical protein
LOC_Os01g57530OsAffx.11636.1.S1_at11/111+33563967..33564182hypothetical protein
LOC_Os01g57540OsAffx.23824.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540Os.56252.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540OsAffx.23824.1.S1_x_at10/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57550Os.27073.1.S1_at11/111+33571590..33575256nodulation protein, putative, expressed
LOC_Os01g57560Os.38421.1.S1_at11/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57560OsAffx.23824.1.S1_x_at1/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57570Os.15322.1.S1_at11/111+33591209..33595292NADPH-dependent FMN reductase family protein, expressed
LOC_Os01g57580OsAffx.27283.1.S1_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g57580OsAffx.27283.2.S1_s_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g57580OsAffx.27283.2.S1_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27073.1.S1_at--878--2031Chr01:33574284..33574308 (25 bp)
ACTTCAACCGAAGAGGCGTGTCTGC
LOC_Os01g57550
Os.27073.1.S1_at--99--4671Chr01:33574299..33574323 (25 bp)
GCGTGTCTGCAATCTTCCTTTTAAG
LOC_Os01g57550
Os.27073.1.S1_at--646--5591Chr01:33574326..33574350 (25 bp)
GAAATACTCTCCAGCGTTATGTCTC
LOC_Os01g57550
Os.27073.1.S1_at--194--2271Chr01:33574403..33574427 (25 bp)
AAATCTCATGTGCACTCTGAACGCG
LOC_Os01g57550
Os.27073.1.S1_at--368--2611Chr01:33574422..33574528 (25 bp)
AACGCGAGGCTCAAATTCTTGCTCA
LOC_Os01g57550
Os.27073.1.S1_at--946--351Chr01:33574582..33574606 (25 bp)
ATAAGTTGGCCGCTGATGCTTTACT
LOC_Os01g57550
Os.27073.1.S1_at--952--9911Chr01:33574664..33574688 (25 bp)
TACTGTGAGTCCTATTGCTTTATAT
LOC_Os01g57550
Os.27073.1.S1_at--917--10191Chr01:33574684..33574708 (25 bp)
TATATATCCTTGTCCGGAGGCTGAA
LOC_Os01g57550
Os.27073.1.S1_at--606--6211Chr01:33574700..33574724 (25 bp)
GAGGCTGAATGAGCATCTCTCTCTC
LOC_Os01g57550
Os.27073.1.S1_at--596--6271Chr01:33574775..33574799 (25 bp)
GATGTCCTGGATTTTCTGAGATTGC
LOC_Os01g57550
Os.27073.1.S1_at--519--2351Chr01:33574807..33574831 (25 bp)
AAAGCTGTCCAGTAGGCATGTGAAA
LOC_Os01g57550
Target Sequence 
ACTTCAACCGAAGAGGCGTGTCTGCAATCTTCCTTTTAAGAAGAAATACTCTCCAGCGTTATGTCTCTGTATTAGCAAAT
GCTCATGATAGTAAGGCAAAGCAGATAAATGGAACTCATAAATCTCATGTGCACTCTGAACGCGAGGCTCAAATTCTTGC
TCAATTTAAGCCAGAAATAGACACAAAGAAGTTGATCGCCGATCTTAAGAAATCCGATAAGTTGGCCGCTGATGCTTTAC
TGTACTTCAAAAAGACACGCCATATTATTCTGTATTATGAGGATGTTGTCAGCAATGATACTGTGAGTCCTATTGCTTTA
TATATCCTTGTCCGGAGGCTGAATGAGCATCTCTCTCTCTCTCTCTCTCTCTCTAAACAGCTTTTTTTTTCTTTCTTCAG
AAGCTCATGGATGTCCTGGATTTTCTGAGATTGCCTAAGAGAAAGCTGTCCAGTAGGCATGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis