Browse Element(s) Details


OsAffx.11636.1.S1_at

Description tigr:9629.m05636
TID=OsAffx.11636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5753011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed
LOC_Os01g57520NANA1+33561093..33561932hypothetical protein
LOC_Os01g57530OsAffx.11636.1.S1_at11/111+33563967..33564182hypothetical protein
LOC_Os01g57540OsAffx.23824.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540Os.56252.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540OsAffx.23824.1.S1_x_at10/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57550Os.27073.1.S1_at11/111+33571590..33575256nodulation protein, putative, expressed
LOC_Os01g57560Os.38421.1.S1_at11/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57560OsAffx.23824.1.S1_x_at1/111+33575726..33583561S-locus glycoprotein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11636.1.S1_at--495--911Chr01:33564122..33564146 (25 bp)
AGGCTGTGCCCGGTGATGGTCACCT
LOC_Os01g57530
OsAffx.11636.1.S1_at--511--6251Chr01:33564108..33564132 (25 bp)
GATGGTCACCTGGACGTTTCTTGCG
LOC_Os01g57530
OsAffx.11636.1.S1_at--844--3351Chr01:33564102..33564126 (25 bp)
CACCTGGACGTTTCTTGCGGGAGAA
LOC_Os01g57530
OsAffx.11636.1.S1_at--1093--4011Chr01:33564094..33564118 (25 bp)
CGTTTCTTGCGGGAGAAGTGCCTCG
LOC_Os01g57530
OsAffx.11636.1.S1_at--698--2853Chr01:3186944..3186964 (21 bp)
AAGTGCCTCGGGTTGGCCACCTTGT
NONE
OsAffx.11636.1.S1_at--21--591Chr01:33564049..33564073 (25 bp)
ATGCCAGCGATGAAGTCGCCGTAGT
LOC_Os01g57530
OsAffx.11636.1.S1_at--304--3393Chr02:15712139..15712158 (20 bp)
CAGCGATGAAGTCGCCGTAGTTGTC
NONE
OsAffx.11636.1.S1_at--927--10771Chr01:33564025..33564049 (25 bp)
TTGTCGCCGGCGCTCACGTTGAACG
LOC_Os01g57530
OsAffx.11636.1.S1_at--833--4571Chr01:33564016..33564040 (25 bp)
GCGCTCACGTTGAACGTCGCGGTGA
LOC_Os01g57530
OsAffx.11636.1.S1_at--1154--1891Chr01:33564003..33564027 (25 bp)
ACGTCGCGGTGAAGAGCGTTTCAAC
LOC_Os01g57530
OsAffx.11636.1.S1_at--659--3971Chr01:33563997..33564021 (25 bp)
CGGTGAAGAGCGTTTCAACGCCATG
LOC_Os01g57530
Target Sequence 
AGGCTGTGCCCGGTGATGGTCACCTGGACGTTTCTTGCGGGAGAAGTGCCTCGGGTTGGCCACCTTGTTGCGGATGCCAG
CGATGAAGTCGCCGTAGTTGTCGCCGGCGCTCACGTTGAACGTCGCGGTGAAGAGCGTTTCAACGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis