Browse Element(s) Details


OsAffx.23824.1.S1_x_at

Description tigr:9629.m05637
TID=OsAffx.23824.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=receptor kinase 5
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5754010/11Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g575601/11S-locus glycoprotein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed
LOC_Os01g57520NANA1+33561093..33561932hypothetical protein
LOC_Os01g57530OsAffx.11636.1.S1_at11/111+33563967..33564182hypothetical protein
LOC_Os01g57540OsAffx.23824.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540Os.56252.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540OsAffx.23824.1.S1_x_at10/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57550Os.27073.1.S1_at11/111+33571590..33575256nodulation protein, putative, expressed
LOC_Os01g57560Os.38421.1.S1_at11/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57560OsAffx.23824.1.S1_x_at1/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57570Os.15322.1.S1_at11/111+33591209..33595292NADPH-dependent FMN reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23824.1.S1_x_at--284--2331Chr01:33569517..33569541 (25 bp)
AAAGTCTCAGACTTCGGCATCGCGA
LOC_Os01g57540
OsAffx.23824.1.S1_x_at--566--2351NONE
AAAGCTACAAAACTGGGACTGCACA
NONE
OsAffx.23824.1.S1_x_at--953--1951Chr01:33569639..33569663 (25 bp)
ACTGGGACTGCACAATGACTTTCGA
LOC_Os01g57540
OsAffx.23824.1.S1_x_at--993--671Chr01:33569653..33569677 (25 bp)
ATGACTTTCGAGATGGTCCAGTGGC
LOC_Os01g57540
OsAffx.23824.1.S1_x_at--653--7792Chr01:33569667..33569691 (25 bp)
GGTCCAGTGGCTATATGTCTCCAGA
LOC_Os01g57540
OsAffx.23824.1.S1_x_at--680--1191Chr01:33569691..33569746 (25 bp)
AGTATGCAATGGACGCTTTGGCGTC
LOC_Os01g57540
OsAffx.23824.1.S1_x_at--515--3711Chr01:33569747..33569771 (25 bp)
CTAGTACTGGAGATTGTCGCCGGCA
LOC_Os01g57540
OsAffx.23824.1.S1_x_at--746--4071Chr01:33569797..33569821 (25 bp)
CGAAATTAATCTCAACCTCCTCAGA
LOC_Os01g57540
OsAffx.23824.1.S1_x_at--679--10771Chr01:33569987..33570011 (25 bp)
TTGAGATGTGTACACGTCGCTCTGT
LOC_Os01g57540
OsAffx.23824.1.S1_x_at--918--1111Chr01:33570074..33570098 (25 bp)
AGTGAGAATGCCACGTTGCCACAGC
LOC_Os01g57540
OsAffx.23824.1.S1_x_at--345--5251Chr01:33570143..33570167 (25 bp)
GAATCATCTCATGGACTTACCAGCA
LOC_Os01g57540
Target Sequence 
AAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGCTACAAAACTGGGA
CTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGCAATGGACGCTTTGGCGTCCTAGTACTGG
AGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGCATGGATGTTG
TGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGT
ACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGTTGTTATGATGCTAGCCAGTG
AGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAACATTGGGAAGATCACATTAGACACAGAATCATCTCATGGA
CTTACCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23824.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis