Browse Element(s) Details


Os.38421.1.S1_at

Description gb:AY327041.1
DB_XREF= gi:32966058
TID=Os.38421.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38421 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) receptor-like protein kinase ARK1 mRNA, complete cds.
PROD=receptor-like protein kinase ARK1
FL= gb:AY327041.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5756011/11S-locus glycoprotein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed
LOC_Os01g57520NANA1+33561093..33561932hypothetical protein
LOC_Os01g57530OsAffx.11636.1.S1_at11/111+33563967..33564182hypothetical protein
LOC_Os01g57540OsAffx.23824.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540Os.56252.1.S1_at11/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57540OsAffx.23824.1.S1_x_at10/111+33567334..33570466Serine/threonine-protein kinase receptor precursor, putative, expressed
LOC_Os01g57550Os.27073.1.S1_at11/111+33571590..33575256nodulation protein, putative, expressed
LOC_Os01g57560Os.38421.1.S1_at11/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57560OsAffx.23824.1.S1_x_at1/111+33575726..33583561S-locus glycoprotein family protein, expressed
LOC_Os01g57570Os.15322.1.S1_at11/111+33591209..33595292NADPH-dependent FMN reductase family protein, expressed
LOC_Os01g57580OsAffx.27283.1.S1_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g57580OsAffx.27283.2.S1_s_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g57580OsAffx.27283.2.S1_at11/111+33599243..33601156Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38421.1.S1_at--932--2851Chr01:33576364..33576479 (25 bp)
AAGTGGTCGGCACATATGGCTATAT
LOC_Os01g57560
Os.38421.1.S1_at--682--8111Chr01:33576321..33576345 (25 bp)
GGACGGAGTCTTTTCTGTCAAATCA
LOC_Os01g57560
Os.38421.1.S1_at--360--2271Chr01:33576112..33576237 (25 bp)
AAATCTTCTGGGACATGCATGGAGC
LOC_Os01g57560
Os.38421.1.S1_at--415--5291Chr01:33576043..33576067 (25 bp)
GAATGGCTCGTTCGACTCAGATGAA
LOC_Os01g57560
Os.38421.1.S1_at--160--6131Chr01:33576002..33576026 (25 bp)
GAGTGGGACTCCTATGTGTGCAAGA
LOC_Os01g57560
Os.38421.1.S1_at--582--2771Chr01:33575981..33576005 (25 bp)
AAGAGAACCCAGATGACCGTCCATT
LOC_Os01g57560
Os.38421.1.S1_at--389--7271Chr01:33575963..33575987 (25 bp)
GTCCATTGATGTCTCAGGTGCTTCT
LOC_Os01g57560
Os.38421.1.S1_at--536--7771Chr01:33575947..33575971 (25 bp)
GGTGCTTCTGATGTTAGCTACGACA
LOC_Os01g57560
Os.38421.1.S1_at--502--5651Chr01:33575926..33575950 (25 bp)
GACAGATGCTACCACATTGCCAACT
LOC_Os01g57560
Os.38421.1.S1_at--302--2411Chr01:33575898..33575922 (25 bp)
AAACAGCCTGGCTTTGCAGCTAGAA
LOC_Os01g57560
Os.38421.1.S1_at--381--4891Chr01:33575733..33575757 (25 bp)
GCTTTCTTCATCACCGTGTGTTTGA
LOC_Os01g57560
Target Sequence 
AAGTGGTCGGCACATATGGCTATATGTCTCCAGAATATGCAATGGACGGAGTCTTTTCTGTCAAATCAGATGTATTTAGT
TTTGGAGTTTTACTACTGGAAATAATTAGTGGCAGGAGGAACAGAGGGGTTTATTCATATTCAAACCACCTAAATCTTCT
GGGACATGCATGGAGCTTATGGAATGAAGGAAAAAGCTTGGAGTTAGCAGATGAAACAATGAATGGCTCGTTCGACTCAG
ATGAAGTACTCAAATGCATCAGAGTGGGACTCCTATGTGTGCAAGAGAACCCAGATGACCGTCCATTGATGTCTCAGGTG
CTTCTGATGTTAGCTACGACAGATGCTACCACATTGCCAACTCCTAAACAGCCTGGCTTTGCAGCTAGAAGAATTCTAAT
GGAAACAGACACATCATCAAGCAAGCCAGACTGCAGCATATTCGACAGTGCAACAGTTACTATACTTGAAGGTCGATAGG
ATGTTAATGTGCTAATTGAACTTACTAGGGGAATGTGCATTACATAATGTGCTTTCTTCATCACCGTGTGTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis