Browse Element(s) Details


Os.9121.1.S1_at

Description gb:AK073973.1
DB_XREF= gi:32983996
TID=Os.9121.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075H06, full insert sequence.
FL= gb:AK073973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2901011/11DNA primase small subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g28960Os.27783.1.S1_at11/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28960Os.7897.1.S2_s_at10/115+16896441..16901206Acyltransferase family protein, expressed
LOC_Os05g28970OsAffx.4465.1.S1_at11/115+16906061..16907877hypothetical protein
LOC_Os05g28980Os.53116.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980Os.7465.1.S1_at11/115+16907947..16914637expressed protein
LOC_Os05g28980OsAffx.27071.1.S1_at10/115+16907947..16914637expressed protein
LOC_Os05g28990OsAffx.27072.1.S1_at11/115+16914304..16916237hypothetical protein
LOC_Os05g29000OsAffx.27073.1.S1_at11/115+16917740..16918258expressed protein
LOC_Os05g29010Os.9121.1.S1_at11/115+16925514..16930747DNA primase small subunit, putative, expressed
LOC_Os05g29020Os.13973.2.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29020OsAffx.4466.1.S1_s_at11/115+16933659..16936781expressed protein
LOC_Os05g29030Os.13973.3.S1_at11/115+16936260..16940904protein phosphatase 2C, putative, expressed
LOC_Os05g29040OsAffx.4467.1.S1_at11/115+16946972..16947567hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0003896molecular_functionDNA primase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9121.1.S1_at--534--1591Chr05:16926048..16926072 (25 bp)
AGCTCCAGCAGTCCAAGAATACCTT
LOC_Os05g29010
Os.9121.1.S1_at--466--2251Chr05:16926014..16926038 (25 bp)
AAATTCACTCAACTTCCAGCTGATC
LOC_Os05g29010
Os.9121.1.S1_at--623--9831Chr05:16925989..16926013 (25 bp)
TTACCAACCTAGTGCCCCATGAAAA
LOC_Os05g29010
Os.9121.1.S1_at--342--1971Chr05:16925941..16925965 (25 bp)
ACTGAACCCGGCATTGGCTGTGTTA
LOC_Os05g29010
Os.9121.1.S1_at--1134--2531Chr05:16925917..16925941 (25 bp)
AACTGGTTAACCACAACGCTCTATG
LOC_Os05g29010
Os.9121.1.S1_at--173--2451Chr05:16925882..16925906 (25 bp)
AAAATACTCTCCGATGCTGCTGTCA
LOC_Os05g29010
Os.9121.1.S1_at--379--9131Chr05:16925865..16925889 (25 bp)
TGCTGTCATGTTAGCTTTGCTCCAA
LOC_Os05g29010
Os.9121.1.S1_at--1111--4331Chr05:16925818..16925842 (25 bp)
CCAGTGACCGTCTTAGAGGCAGCTT
LOC_Os05g29010
Os.9121.1.S1_at--260--7791Chr05:16925793..16925817 (25 bp)
GGTGCTGGCTTGAACCTTTTGATCT
LOC_Os05g29010
Os.9121.1.S1_at--444--8851Chr05:16925774..16925798 (25 bp)
TGATCTTTCATGTTGCTGACTTGAT
LOC_Os05g29010
Os.9121.1.S1_at--910--3011Chr05:16925590..16925614 (25 bp)
AATGCTCGGTTTGTGGTTGATGACT
LOC_Os05g29010
Target Sequence 
AGCTCCAGCAGTCCAAGAATACCTTGACTTGGTAAAATTCACTCAACTTCCAGCTGATCTTACCAACCTAGTGCCCCATG
AAAAGCTTNCTTCTCCATGAGACGAACCACTGAACCCGGCATTGGCTGTGTTAACTGGTTAACCACAACGCTCTATGAAT
GAGGAGCAAAATACTCTCCGATGCTGCTGTCATGTTAGCTTTGCTCCAAGGAAGTTGCAATTGTAGAATATCCAGTGACC
GTCTTAGAGGCAGCTTGGTGCTGGCTTGAACCTTTTGATCTTTCATGTTGCTGACTTGATGTTATTAGGATAAATTCCTT
TAATTGTTGTGAAATGAATTTTATAGGATTCCTATAAGTCGCTGAAAAGAATGATTGTTAAATGCTTCATACCAAGCTAG
TAGCCGCTATAAGATCTAGACTAGAATTAGTAAAATTAACCATCAAGATTGCTTAGAGCAATGCTCGGTTTGTGGTTGAT
GACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis