Browse Element(s) Details


Os.9135.1.S1_at

Description gb:AK108240.1
DB_XREF= gi:32993449
TID=Os.9135.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription initiation factor TFIID-1 (OSJNBa0019M20.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-G12, full insert sequence.
FL= gb:AK108240.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2966011/11TATA-box binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29620Os.12663.1.S1_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29620Os.12663.1.S1_x_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29630OsAffx.18450.1.S1_at6/1110+15077883..15079071hypothetical protein
LOC_Os10g29640OsAffx.5031.3.S1_x_at11/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.1.S1_x_at5/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.2.S1_x_at4/1110+15081116..15081928hypothetical protein
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29660Os.57360.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29660Os.9135.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29670Os.53080.1.S1_at10/1110+15098924..15102234expressed protein
LOC_Os10g29680OsAffx.18451.1.S1_at11/1110+15107203..15108340hypothetical protein
LOC_Os10g29690OsAffx.18452.1.S1_at11/1110+15109238..15109714hypothetical protein
LOC_Os10g29700OsAffx.28148.1.S1_x_at11/1110+15114477..15115802hypothetical protein
LOC_Os10g29700OsAffx.16241.1.S1_at1/1110+15114477..15115802hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_x_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29710OsAffx.30597.1.S1_at11/1110+15118334..15118935hypothetical protein
LOC_Os10g29720OsAffx.30596.1.S1_at1/1110+15121603..15125793hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003702molecular_functionRNA polymerase II transcription factor activity
GO:0017025molecular_functionTATA-binding protein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9135.1.S1_at--707--111Chr10:15096233..15096255 (23 bp)
ATTCTCATGGCGCATTCTCTAGTTA
LOC_Os10g29660
Os.9135.1.S1_at--519--10611Chr10:15096037..15096061 (25 bp)
TTCCCTGGGCTGATTTACCGGATGA
LOC_Os10g29660
Os.9135.1.S1_at--44--5091Chr10:15096011..15096035 (25 bp)
GCAGCCAAAGATTGTGCTTCTCATT
LOC_Os10g29660
Os.9135.1.S1_at--529--4911Chr10:15095996..15096020 (25 bp)
GCTTCTCATTTTTGTCTCTGGCAAG
LOC_Os10g29660
Os.9135.1.S1_at--643--6711Chr10:15095968..15095992 (25 bp)
GTTCTCACTGGAGCTAAGTACCGCA
LOC_Os10g29660
Os.9135.1.S1_at--555--6051Chr10:15095941..15095965 (25 bp)
GAGATTTACGCTGCCTTTGAGAACA
LOC_Os10g29660
Os.9135.1.S1_at--158--691Chr10:15095917..15095941 (25 bp)
ATGTTCCCGGTGCTCACTGAATACA
LOC_Os10g29660
Os.9135.1.S1_at--790--9171Chr10:15095748..15095772 (25 bp)
TGCCGCTGTACATACCATCTTAAGG
LOC_Os10g29660
Os.9135.1.S1_at--74--1271Chr10:15095711..15095735 (25 bp)
AGATTTTGAGACATGCACCTGGCGT
LOC_Os10g29660
Os.9135.1.S1_at--922--10291Chr10:15095674..15095698 (25 bp)
TTTCCTTTGTTCTTCGTAGCAGTAG
LOC_Os10g29660
Os.9135.1.S1_at--915--10831Chr10:15095539..15095563 (25 bp)
TTGTGTGCCTGCGTTCTGAATTGTA
LOC_Os10g29660
Target Sequence 
ATTCTCATGGCGCATTCTCTAGTTATGAGCCAGAGCTCTTCCCTGGGCTGATTTACCGGATGAAGCAGCCAAAGATTGTG
CTTCTCATTTTTGTCTCTGGCAAGATTGTTCTCACTGGAGCTAAGTACCGCAAAGAGATTTACGCTGCCTTTGAGAACAT
GTTCCCGGTGCTCACTGAATACAGGAAAACTCAGCAGCGNTGNNNNAATGATTTNTCGACAGAATGGGGAGTTCGCTGCC
GCTGTACATACCATCTTAAGGACCTGGCTGCCAAGATTTTGAGACATGCACCTGGCGTCATTCCTTTTTCTTTCCTTTGT
TCTTCGTAGCAGTAGGGTAGGAGAGCAACTGCGTAAAGGAGAGTATGTAAACAAGTTGATCAAAGTATTCTTTTGATAAA
CTAATGCTGACATGCAAGAAATGCATCCTGACTTGAGATCATGTGTTGTGTGCCTGCGTTCTGAATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis