Browse Element(s) Details


Os.9163.1.S1_at

Description gb:AK064838.1
DB_XREF= gi:32974856
TID=Os.9163.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9163 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000F23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000F23, full insert sequence.
FL= gb:AK064838.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g487502/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48700OsAffx.28957.1.S1_at11/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.4557.1.S1_s_at1/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.2045.1.S1_x_at1/117+29154288..29160937expressed protein
LOC_Os07g48690Os.49951.1.S1_at11/117+29160723..29164881expressed protein
LOC_Os07g48710Os.4651.1.S1_at11/117+29169385..29170532VQ motif family protein, expressed
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed
LOC_Os07g48800OsAffx.28959.1.S1_s_at11/117+29205241..29205849VQ motif family protein, expressed
LOC_Os07g48810Os.13937.1.S1_at11/117+29207863..29211082peptidyl-prolyl cis-trans isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0046556molecular_functionalpha-N-arabinofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9163.1.S1_at--40--8911Chr07:29186170..29186194 (25 bp)
TGAGAACTCATTCCAGCAGCCACAA
LOC_Os07g48750
Os.9163.1.S1_at--16--4091Chr07:29186316..29186340 (25 bp)
CGAGCCCGGTGGACAACGCGAATGA
LOC_Os07g48750
Os.9163.1.S1_at--782--5951Chr07:29186401..29186425 (25 bp)
GAGCAAGCACTCGACCATATGAAAG
NONE
Os.9163.1.S1_at--458--7591Chr07:29186513..29186537 (25 bp)
GGGCTTGATTGCTCAGGCTAACTGC
NONE
Os.9163.1.S1_at--178--7111Chr07:29186618..29186642 (25 bp)
GTCATCCGACTCAAGAATTGTTGTT
NONE
Os.9163.1.S1_at--688--9651Chr07:29186653..29186677 (25 bp)
TCAGATTAGCTGACGTTGCACCGCA
NONE
Os.9163.1.S1_at--1008--4971Chr07:29186675..29186699 (25 bp)
GCATCTGGGATCTTGGCTGGCACAC
NONE
Os.9163.1.S1_at--175--8751Chr07:29186714..29186738 (25 bp)
TGTACATACGTGCATACCATCACCA
NONE
Os.9163.1.S1_at--848--391Chr07:29186732..29186756 (25 bp)
ATCACCACCTGCTAGTGCTAGGAAG
NONE
Os.9163.1.S1_at--131--3671Chr07:29186769..29186793 (25 bp)
CTTACAGTGGCAATTTCCTTGGCTT
NONE
Os.9163.1.S1_at--909--10671Chr07:29186783..29186807 (25 bp)
TTCCTTGGCTTATTAGGTCGCATAA
NONE
Target Sequence 
TGAGAACTCATTCCAGCAGCCACAAAAGGTGGCGCCAGTGTCGAGCCCGGTGGACAACGCGAATGAGCAGATGGGCGTGT
TGGTGGATCCATACTCCCTCACGTCGTTCGACCTGCTGCTGCAACCGAGCAAGCACTCGACCATATGAAAGGAGATATAT
ACTGTAGTAGTAATAGTCTTAAGAATATTTATTAGCCTGCAAAAAGAGGGGAAAAGAGAATAAAGGAATGTTGATGGGGG
GCTTGATTGCTCAGGCTAACTGCATTGCATGGAACATAATATGCCCATCAATATTCTTATTCGATTCAGCCCNAGAATAG
AGAGATTTNCCNAGGTGAGGGTGAGTCATCCGACTCAAGAATTGTTGTTTCAATGAAATTCAGATTAGCTGACGTTGCAC
CGCATCTGGGATCTTGGCTGGCACACAGCATATGTAAGTATGTACATACGTGCATACCATCACCACCTGCTAGTGCTAGG
AAGCTTCCTAAATNCCTTACAGTGGCAATTTCCTTGGCTTATTAGGTCGCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis