Browse Element(s) Details


Os.9197.1.S1_at

Description gb:AK101459.1
DB_XREF= gi:32986668
TID=Os.9197.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033040D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033040D12, full insert sequence.
FL= gb:AK101459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3314011/1140S ribosomal protein S14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33110Os.9416.1.S1_at10/112+19676675..19681381Beta-fructofuranosidase, insoluble isoenzyme 1 precursor, putative, expressed
LOC_Os02g33120OsAffx.24551.1.S1_at11/112+19697600..19698067protein phosphatase 2C, putative
LOC_Os02g33130OsAffx.24552.1.S1_at11/112+19702791..19703462pectinesterase inhibitor domain containing protein, expressed
LOC_Os02g33140Os.9197.1.S1_at11/112+19704439..1970760040S ribosomal protein S14, putative, expressed
LOC_Os02g33150OsAffx.12328.1.S1_at11/112+19708656..19712863expressed protein
LOC_Os02g33160OsAffx.13041.1.S1_x_at3/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160OsAffx.13041.1.S1_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33160Os.28110.1.S1_x_at1/112+19716165..19716922transposon protein, putative, unclassified
LOC_Os02g33170NANA2+19718014..19718704hypothetical protein
LOC_Os02g33180OsAffx.24554.1.S1_s_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180Os.4686.1.S1_at11/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33180OsAffx.24554.1.S1_at8/112+19721252..19724020Rar1, putative, expressed
LOC_Os02g33190NANA2+19728096..19729943retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9197.1.S1_at--359--7991Chr02:19704917..19704941 (25 bp)
GGATGTTACTCCAGTGCCGACTGAT
LOC_Os02g33140
Os.9197.1.S1_at--137--4731Chr02:19704857..19704881 (25 bp)
GCTGTAATCTTCATGCGGCCTCAAA
LOC_Os02g33140
Os.9197.1.S1_at--533--2471Chr02:19704827..19704851 (25 bp)
AACACTCTGCTCTCCTAGATGTTAC
LOC_Os02g33140
Os.9197.1.S1_at--999--6271Chr02:19704810..19704834 (25 bp)
GATGTTACCGTCTGCATTGGACTAT
LOC_Os02g33140
Os.9197.1.S1_at--206--10311Chr02:19704781..19704805 (25 bp)
TTTCTGTGCTTTTCATTCGGTGGAT
LOC_Os02g33140
Os.9197.1.S1_at--316--1731Chr02:19704749..19704773 (25 bp)
ACCAGTTTTGAACTCTGTTTCTGCA
LOC_Os02g33140
Os.9197.1.S1_at--366--9131Chr02:19704716..19704740 (25 bp)
TGCTGTCCTCAATGTAACCAACGTT
LOC_Os02g33140
Os.9197.1.S1_at--321--2591Chr02:19704697..19704721 (25 bp)
AACGTTATCTGCTTCGACCGGTGAA
LOC_Os02g33140
Os.9197.1.S1_at--151--5811Chr02:19704682..19704706 (25 bp)
GACCGGTGAACATACTCCTGTTGGA
LOC_Os02g33140
Os.9197.1.S1_at--783--8891Chr02:19704652..19704676 (25 bp)
TGAGCATATGCCACTACAGGCCGGA
LOC_Os02g33140
Os.9197.1.S1_at--257--5631Chr02:19704629..19704653 (25 bp)
GACACTGCTTTCGTTGTTTATTCGG
LOC_Os02g33140
Target Sequence 
GGATGTTACTCCAGTGCCGACTGATAGCACACGCAGAAAGGGTGGTAGAAGGGGTAGGAGGCTGTAATCTTCATGCGGCC
TCAAACCGACAACACTCTGCTCTCCTAGATGTTACCGTCTGCATTGGACTATTTTGTTTCTGTGCTTTTCATTCGGTGGA
TTATTTAAACCAGTTTTGAACTCTGTTTCTGCATCAATTCATGCTGTCCTCAATGTAACCAACGTTATCTGCTTCGACCG
GTGAACATACTCCTGTTGGATTACTTGAGCATATGCCACTACAGGCCGGACACTGCTTTCGTTGTTTATTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis