Browse Element(s) Details


Os.9295.1.S1_at

Description gb:AK062327.1
DB_XREF= gi:32972345
TID=Os.9295.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D05, full insert sequence.
FL= gb:AK062327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1081010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10790Os.53264.1.S1_x_at11/112+5709733..5732172expressed protein
LOC_Os02g10790OsAffx.11980.1.S1_at9/112+5709733..5732172expressed protein
LOC_Os02g10800Os.4975.1.S1_at11/112+5736608..5738792Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os02g10810Os.9295.1.S1_at10/112+5740412..5742437expressed protein
LOC_Os02g10810Os.6721.1.S1_x_at1/112+5740412..5742437expressed protein
LOC_Os02g10820Os.47337.1.S1_at11/112+5744792..5748139expressed protein
LOC_Os02g10820Os.55842.1.S1_at1/112+5744792..5748139expressed protein
LOC_Os02g10830NANA2+5748604..5749500satase isoform I, putative
LOC_Os02g10840Os.6191.2.S1_x_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.1.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10840Os.6191.2.S1_at11/112+5750577..5753676transposon protein, putative, unclassified, expressed
LOC_Os02g10850OsAffx.11982.1.S1_at11/112+5755371..5758098Kelch motif family protein, expressed
LOC_Os02g10860OsAffx.2569.1.S1_s_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860Os.8561.1.S1_at11/112+5760633..5763645TGACG-motif binding factor, putative, expressed
LOC_Os02g10860OsAffx.2569.1.S1_at9/112+5760633..5763645TGACG-motif binding factor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9295.1.S1_at--326--9811Chr02:5741894..5741918 (25 bp)
TAACGAAGTGGAGCTCTCGGCACTC
LOC_Os02g10810
Os.9295.1.S1_at--344--9451NONE
TCGGCACTCGGCATGGCTATTGCAA
NONE
Os.9295.1.S1_at--732--8491Chr02:5741035..5741057 (23 bp)
TGGCTATTGCAACTGTGGTGACTGT
LOC_Os02g10810
Os.9295.1.S1_at--923--5651Chr02:5740884..5740908 (25 bp)
GACATCTACTGTTGACGTCAAAGAT
LOC_Os02g10810
Os.9295.1.S1_at--1096--2791Chr02:5740864..5740888 (25 bp)
AAGATGATTCGAGGAGTCGCCCTAT
LOC_Os02g10810
Os.9295.1.S1_at--739--8031Chr02:5740852..5740876 (25 bp)
GGAGTCGCCCTATGCAGAAAGCCAA
LOC_Os02g10810
Os.9295.1.S1_at--892--3291Chr02:5740709..5740733 (25 bp)
CAAATTTGACGAACTGATGGCAGCA
LOC_Os02g10810
Os.9295.1.S1_at--946--10211Chr02:5740585..5740609 (25 bp)
TATTCTGCTGCTAGGTGTTGTATTT
LOC_Os02g10810
Os.9295.1.S1_at--596--4891Chr02:5740513..5740537 (25 bp)
GCTTATTTGGTGTGCTTTTACTTGA
LOC_Os02g10810
Os.9295.1.S1_at--959--1171Chr02:5740445..5740469 (25 bp)
AGTACGGTGCTCATCTTGATTTGCC
LOC_Os02g10810
Os.9295.1.S1_at--236--3611Chr02:5740431..5740455 (25 bp)
CTTGATTTGCCCCAATTTACATTTG
LOC_Os02g10810
Target Sequence 
TAACGAAGTGGAGCTCTCGGCACTCGGCATGGCTATTGCAACTGTGGTGACTGTTGCTGAAATTCTGAAAAATAATGGCC
TTGCTGTCGAGAAGAAGATTATGACATCTACTGTTGACGTCAAAGATGATTCGAGGAGTCGCCCTATGCAGAAAGCCAAG
ATTGAAATAGTGCTGGGCAAGACGGACAAATTTGACGAACTGATGGCAGCAGCCGCGGAAGAGAGGGAGGCCGCGGCAGC
GGAGGCTGAGGCCGAGGAGCAAAGCTAATATTAGAAGCCAAAAAGCTTCCTGTTGTAGCTTTAATTTTAGTATTCTGCTG
CTAGGTGTTGTATTTGGAACTCCTTGATACATCAAGGGCTTGTGTAATCAATTAGTGGCACAGCTTATTTGGTGTGCTTT
TACTTGATTGGTTAAGTTTTGATGCCNAACTTATGACNAGTGAAGGTGTATGAGTACGGTGCTCATCTTGATTTGCCCCA
ATTTACATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9295.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis