Browse Element(s) Details


Os.9312.1.S1_at

Description gb:AF261275.1
DB_XREF= gi:8118431
GEN=EXPB7
TID=Os.9312.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9312 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-expansin (EXPB7) mRNA, complete cds.
PROD=beta-expansin
FL= gb:AF261275.1 gb:AK061423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0127011/11Beta-expansin 1a precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01240OsAffx.12698.1.S1_at10/113+130705..148398CCR4-Not complex component, Not1 family protein
LOC_Os03g01250Os.24715.2.A1_a_at11/113+148216..1534622-phosphoglycerate kinase, putative, expressed
LOC_Os03g01250Os.24715.3.S1_x_at8/113+148216..1534622-phosphoglycerate kinase, putative, expressed
LOC_Os03g01260Os.2615.1.S1_at11/113+157536..158553Beta-expansin 1a precursor, putative, expressed
LOC_Os03g01270Os.9312.1.S1_at11/113+167680..169639Beta-expansin 1a precursor, putative, expressed
LOC_Os03g01280OsAffx.3107.1.S1_at11/113+174927..175946hypothetical protein
LOC_Os03g01290OsAffx.24931.1.S1_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.24931.1.S1_x_at11/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01290OsAffx.4023.1.S1_x_at1/113+180963..183822Nitrate/chlorate transporter, putative, expressed
LOC_Os03g01300Os.10171.1.S1_at11/113+186677..187465Cortical cell delineating protein precursor, putative, expressed
LOC_Os03g01310Os.9346.1.S1_at11/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g01310Os.10171.1.S1_at1/113+189424..190168Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9312.1.S1_at--898--3471Chr03:169074..169094 (21 bp)
CAGGAGGGTGCCTTGTCAGTATCCA
LOC_Os03g01270
Os.9312.1.S1_at--748--5431Chr03:169130..169154 (25 bp)
GAACCCGGTGTACATGGCGATACTG
LOC_Os03g01270
Os.9312.1.S1_at--771--5831Chr03:169194..169218 (25 bp)
GACCTGATGGAGTCGCGCTACAGCA
LOC_Os03g01270
Os.9312.1.S1_at--141--3531Chr03:169412..169436 (25 bp)
CATCGTCCAGTTCGACTAGCTAATT
LOC_Os03g01270
Os.9312.1.S1_at--1095--9871Chr03:169442..169466 (25 bp)
TACTCCACTCCTTGCCATTAATTAG
LOC_Os03g01270
Os.9312.1.S1_at--429--6891Chr03:169466..169490 (25 bp)
GTATATACTCCATTATTTGCCATTT
LOC_Os03g01270
Os.9312.1.S1_at--1013--10691Chr03:169482..169506 (25 bp)
TTGCCATTTGCACATCATCGAGACG
LOC_Os03g01270
Os.9312.1.S1_at--1149--411Chr03:169495..169519 (25 bp)
ATCATCGAGACGTCGCTTGTGACGT
LOC_Os03g01270
Os.9312.1.S1_at--867--7371Chr03:169513..169537 (25 bp)
GTGACGTCCGTTTCAGTGCGTATAT
LOC_Os03g01270
Os.9312.1.S1_at--33--4651Chr03:169530..169554 (25 bp)
GCGTATATGCATGTTGTACTCCTCC
LOC_Os03g01270
Os.9312.1.S1_at--400--7011Chr03:169545..169569 (25 bp)
GTACTCCTCCTTACTTGATTACATG
LOC_Os03g01270
Target Sequence 
CAGGAGGGTGCCTTGTCAGTATCCAGGGCTGACGGTGACGTTCCACGTGGAGCAAGGGTCGAACCCGGTGTACATGGCGA
TACTGGTGGAGTACGANAACGGGGACGGGGACGTGGTGCAGGTGGACCTGATGGAGTCGCGCTACAGCACCGGGGGCGTG
GATGGGACNCCGACGGGGGTGTGGACGCCGATGAGGGAGTCGTGGGGATCGATATGGAGGCTGGACACCAACCACCCGCT
GCAGGGGCCCTTCTCCCTCCGCATCACCAACGAGTCCGGCAAGACCCTCATCGCCGATCAGGTCATCCCCGCCGACTGGC
AGCCCAACACCGTCTACAGCTCCATCGTCCAGTTCGACTAGCTAATTACTACTACTCCACTCCTTGCCATTAATTAGTAT
ATACTCCATTATTTGCCATTTGCACATCATCGAGACGTCGCTTGTGACGTCCGTTTCAGTGCGTATATGCATGTTGTACT
CCTCCTTACTTGATTACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis