Browse Element(s) Details


OsAffx.12698.1.S1_at

Description tigr:9631.m00026
TID=OsAffx.12698.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CCR4-Not complex component, Not1, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0124010/11CCR4-Not complex component, Not1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01216Os.47744.1.S1_at11/113+117800..121749phosphatidylserine decarboxylase, putative, expressed
LOC_Os03g01222Os.49336.1.S1_s_at11/113+122969..126116Formyl transferase family protein, expressed
LOC_Os03g01230Os.7495.1.S1_at11/113+126530..127404DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative, expressed
LOC_Os03g01240OsAffx.12698.1.S1_at10/113+130705..148398CCR4-Not complex component, Not1 family protein
LOC_Os03g01250Os.24715.2.A1_a_at11/113+148216..1534622-phosphoglycerate kinase, putative, expressed
LOC_Os03g01250Os.24715.3.S1_x_at8/113+148216..1534622-phosphoglycerate kinase, putative, expressed
LOC_Os03g01260Os.2615.1.S1_at11/113+157536..158553Beta-expansin 1a precursor, putative, expressed
LOC_Os03g01270Os.9312.1.S1_at11/113+167680..169639Beta-expansin 1a precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12698.1.S1_at--738--8791Chr03:147616..147640 (25 bp)
TGTTGCCGGGACACGCTACAATGTT
LOC_Os03g01240
OsAffx.12698.1.S1_at--989--6691Chr03:147638..147662 (25 bp)
GTTCCTCTCATTAATTCGCTTGTTC
LOC_Os03g01240
OsAffx.12698.1.S1_at--553--4931Chr03:147655..147679 (25 bp)
GCTTGTTCTCTATGTCGGTATCCAA
LOC_Os03g01240
OsAffx.12698.1.S1_at--1056--2571Chr03:147782..147806 (25 bp)
AACGGAGTCTAGTGCATCTGGTCCA
LOC_Os03g01240
OsAffx.12698.1.S1_at--208--5671Chr03:147852..147876 (25 bp)
GACTTGGACACAGAGGGCCGGTACC
LOC_Os03g01240
OsAffx.12698.1.S1_at--692--9751Chr03:147914..147938 (25 bp)
TAATATCCATACACACTGCTTCTAC
LOC_Os03g01240
OsAffx.12698.1.S1_at--169--10551Chr03:147939..147963 (25 bp)
TTCATCATCCTGCATCTGTTTTCAG
LOC_Os03g01240
OsAffx.12698.1.S1_at--647--1671Chr03:148282..148306 (25 bp)
AGCCGACCTTTTATACGCTGTGGAC
LOC_Os03g01240
OsAffx.12698.1.S1_at--344--7992Chr03:148347..148371 (25 bp)
GGATGACCCGAGATTGACCTCTTTA
LOC_Os03g01240
OsAffx.12698.1.S1_at--279--9551Chr03:148366..148390 (25 bp)
TCTTTATACTCGTCTTTTCGCTCAA
LOC_Os03g01240
OsAffx.12698.1.S1_at--219--5932Chr03:148397..148421 (25 bp)
GAGCATACTCGTCTCAATTCTGCGA
NONE
Target Sequence 
TGTTGCCGGGACACGCTACAATGTTCCTCTCATTAATTCGCTTGTTCTCTATGTCGGTATCCAAGGTTTGCAACAGCAAC
AAACGGAGTCTAGTGCATCTGGTCCAGCAATCCATACTGCCCACATGGATATTTTCAGAACTCTTATGGCAGACTTGGAC
ACAGAGGGCCGGTACCTTGTTTTGAATGCAATAGCTAACCAGCTGCGTTACCCTAATATCCATACACACTGCTTCTACTT
CATCATCCTGCATCTGTTTTCAGAAGCTACCCAGGAAATTATCCAGGATCAGATAATGAGGGTTATCTTGGAACGTCTAG
TAGTGAGACGTCCTCATCCTTGGGGCTTACAAATGACTTTGGTTGAACTGATTAAGAATCCACGTTACAAGCTGTGGAGC
CGACCTTTTATACGCTGTGGACCACAGATTGACAAGGTGCTGATCGAGTTTGTTGATATGTTGGATGACCCGAGATTGAC
CTCTTTATACTCGTCTTTTCGCTCAATTAATTGAGCATACTCGTCTCAATTCTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis