Browse Element(s) Details


Os.49336.1.S1_s_at

Description gb:AK071358.1
DB_XREF= gi:32981381
TID=Os.49336.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49336 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089B21, full insert sequence.
FL= gb:AK071358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0122211/11Formyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01216Os.47744.1.S1_at11/113+117800..121749phosphatidylserine decarboxylase, putative, expressed
LOC_Os03g01222Os.49336.1.S1_s_at11/113+122969..126116Formyl transferase family protein, expressed
LOC_Os03g01230Os.7495.1.S1_at11/113+126530..127404DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative, expressed
LOC_Os03g01240OsAffx.12698.1.S1_at10/113+130705..148398CCR4-Not complex component, Not1 family protein
LOC_Os03g01250Os.24715.2.A1_a_at11/113+148216..1534622-phosphoglycerate kinase, putative, expressed
LOC_Os03g01250Os.24715.3.S1_x_at8/113+148216..1534622-phosphoglycerate kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009152biological_processpurine ribonucleotide biosynthesis
GO:0008864molecular_functionformyltetrahydrofolate deformylase activity
GO:0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49336.1.S1_s_at--399--10811Chr03:125028..125052 (25 bp)
TTGGTTCAAGGTACCGATTTTGTGG
LOC_Os03g01222
Os.49336.1.S1_s_at--854--5291Chr03:125365..125389 (25 bp)
GAAGGCTTTCTCAAGGCTTATGGCA
LOC_Os03g01222
Os.49336.1.S1_s_at--280--9631Chr03:125409..125433 (25 bp)
TCATGGTCTTCTTCCCTCATTTAAG
LOC_Os03g01222
Os.49336.1.S1_s_at--1010--6111Chr03:125435..125455 (21 bp)
GAGGGAATCCTTCGAGACAGGCCTT
LOC_Os03g01222
Os.49336.1.S1_s_at--918--5651Chr03:125529..125551 (23 bp)
GACAGGCCTTCAACGCTGGAGTAAA
LOC_Os03g01222
Os.49336.1.S1_s_at--107--3171Chr03:125551..125575 (25 bp)
AATTGATCGGCGCAACCAGCCATTT
LOC_Os03g01222
Os.49336.1.S1_s_at--204--1691Chr03:125568..125592 (25 bp)
AGCCATTTTGTTACCCCAGAACTTG
LOC_Os03g01222
Os.49336.1.S1_s_at--61--6351Chr03:125592..125616 (25 bp)
GATGCTGGCCCAATCATTGAGCAGA
LOC_Os03g01222
Os.49336.1.S1_s_at--325--6651Chr03:125761..125785 (25 bp)
GTTGAACGGGTGTCCCACAGAGACA
LOC_Os03g01222
Os.49336.1.S1_s_at--153--2151Chr03:125777..125801 (25 bp)
ACAGAGACACGCTACAGAGCTTTGT
LOC_Os03g01222
Os.49336.1.S1_s_at--186--1451Chr03:125822..125846 (25 bp)
AGAAGCAGTGCCTAGCAGAAGCTAT
LOC_Os03g01222
Target Sequence 
TTGGTTCAAGGTACCGATTTTGTGGTACTGGCAAGATATATGCAGATATTATCTGAAGGCTTTCTCAAGGCTTATGGCAA
AGATATTATTAACATCCATCATGGTCTTCTTCCCTCATTTAAGGGAGGGAATCCTTCGAGACAGGCCTTCAACGCTGGAG
TAAAATTGATCGGCGCAACCAGCCATTTTGTTACCCCAGAACTTGATGCTGGCCCAATCATTGAGCAGATGGTTGAACGG
GTGTCCCACAGAGACACGCTACAGAGCTTTGTGGTGAAATCTGAGAACCTAGAGAAGCAGTGCCTAGCAGAAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49336.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis