Browse Element(s) Details


Os.7306.1.S1_at

Description gb:AK066228.1
DB_XREF= gi:32976246
TID=Os.7306.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013058B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058B09, full insert sequence.
FL= gb:AK066228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0120011/11SNF2P, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01130Os.5800.1.S1_at11/113+79093..82361UPF0326 protein CGI-146 homolog, putative, expressed
LOC_Os03g01140NANA3+82897..83326hypothetical protein
LOC_Os03g01150Os.8944.1.S1_at11/113+84875..88867Palmitoyl protein thioesterase containing protein, expressed
LOC_Os03g01160OsAffx.24929.1.S1_at11/113+88732..92755U-box domain containing protein, expressed
LOC_Os03g01170Os.50315.1.S1_at11/113+94138..97439Hexose carrier protein HEX6, putative, expressed
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01216Os.47744.1.S1_at11/113+117800..121749phosphatidylserine decarboxylase, putative, expressed
LOC_Os03g01222Os.49336.1.S1_s_at11/113+122969..126116Formyl transferase family protein, expressed
LOC_Os03g01230Os.7495.1.S1_at11/113+126530..127404DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative, expressed
LOC_Os03g01240OsAffx.12698.1.S1_at10/113+130705..148398CCR4-Not complex component, Not1 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006346biological_processmethylation-dependent chromatin silencing
GO:0000786cellular_componentnucleosome
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7306.1.S1_at--180--8271Chr03:105428..105452 (25 bp)
GGCAGATCTTCACTTGATTCAGTTA
LOC_Os03g01200
Os.7306.1.S1_at--878--6071Chr03:104716..104740 (25 bp)
GAGTTTAGATGCTCCTCTCTGGGTC
LOC_Os03g01200
Os.7306.1.S1_at--121--4751Chr03:104685..104709 (25 bp)
GCTGTTGTGCAGTCTTATAATCCAA
LOC_Os03g01200
Os.7306.1.S1_at--215--2791Chr03:104605..104629 (25 bp)
AAGAGTGGCCTTTTCAGCTGCTCAA
LOC_Os03g01200
Os.7306.1.S1_at--268--7491Chr03:104102..104126 (25 bp)
GTGGGTCCCAACGATCAGAGTGGTA
LOC_Os03g01200
Os.7306.1.S1_at--827--7831Chr03:104081..104105 (25 bp)
GGTACACCATAGAACGGCTGCTGAG
LOC_Os03g01200
Os.7306.1.S1_at--567--951Chr03:104058..104082 (25 bp)
AGGAAATACTCGTCTCTTCATGGCG
LOC_Os03g01200
Os.7306.1.S1_at--436--871Chr03:104042..104063 (22 bp)
ATGGCGTCGACATCTTTGTGTACTA
LOC_Os03g01200
Os.7306.1.S1_at--604--8151Chr03:103835..103859 (25 bp)
GGAAATGCCTGCCATCTGTAATATG
LOC_Os03g01200
Os.7306.1.S1_at--420--10831Chr03:103758..103782 (25 bp)
TTGTGTAATGTCTAATGCCTCGCGT
LOC_Os03g01200
Os.7306.1.S1_at--187--9191Chr03:103743..103767 (25 bp)
TGCCTCGCGTCAGTTAGCTACGAAA
LOC_Os03g01200
Target Sequence 
GGCAGATCTTCACTTGATTCAGTTAGATGAAGCCNAAGTGCAACCGGAGTTTAGATGCTCCTCTCTGGGTCGCGCTAGCT
GTTGTGCAGTCTTATAATCCAAGGCGAAAGGTTCCACGAAGTGAAATTTCCATACCTGATTTGGAGCTTTGTTTATCAAG
AGTGGCCTTTTCAGCTGCTCAACATTCCGCGAGCATCCACATGCCCCGAATCGGTCTCCAAGGTGGAGGTGGAGGTGGGT
CCCAACGATCAGAGTGGTACACCATAGAACGGCTGCTGAGGAAATACTCGTCTCTTCATGGCGTCGACATCTTTGTGTAC
TATTATAGGCGAGGGAACAAGCACTAGTTGGCAGCTTAAACAATAGAGAATGGCCATAGTACATAAGGAAGTGCCCCTCA
CCCTGTAGACTAGGAAATGCCTGCCATCTGTAATATGAATGCAATGCATGTACTCTGAAAGGAGGAGGAGTAGTAGTAGG
AGAAGTCTCTTGTGTAATGTCTAATGCCTCGCGTCAGTTAGCTACGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis