Browse Element(s) Details


Os.5800.1.S1_at

Description gb:AK103335.1
DB_XREF= gi:32988544
TID=Os.5800.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125P20, full insert sequence.
FL= gb:AK061783.1 gb:AK103335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0113011/11UPF0326 protein CGI-146 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01110Os.40388.2.S1_s_at11/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.36367.1.S1_at5/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.40388.2.S1_x_at2/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.4648.1.S1_at1/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01120Os.52670.1.S1_at11/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01120Os.19569.1.S1_at1/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01130Os.5800.1.S1_at11/113+79093..82361UPF0326 protein CGI-146 homolog, putative, expressed
LOC_Os03g01140NANA3+82897..83326hypothetical protein
LOC_Os03g01150Os.8944.1.S1_at11/113+84875..88867Palmitoyl protein thioesterase containing protein, expressed
LOC_Os03g01160OsAffx.24929.1.S1_at11/113+88732..92755U-box domain containing protein, expressed
LOC_Os03g01170Os.50315.1.S1_at11/113+94138..97439Hexose carrier protein HEX6, putative, expressed
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5800.1.S1_at--258--1991Chr03:81790..81814 (25 bp)
ACTCCTGGCAGGGATAGCTTGTAAT
LOC_Os03g01130
Os.5800.1.S1_at--1003--7071Chr03:81810..81834 (25 bp)
GTAATTGCATGTATTCTCCATTGAT
LOC_Os03g01130
Os.5800.1.S1_at--239--10311Chr03:81885..81909 (25 bp)
TTTCTTGCTGAGTGGCGATGTGGCT
LOC_Os03g01130
Os.5800.1.S1_at--358--10111Chr03:81920..81944 (25 bp)
TATGCTGTGGGCAGTCAACCTTGAA
LOC_Os03g01130
Os.5800.1.S1_at--712--7831Chr03:81969..81993 (25 bp)
GGTAATTCTGTGTGTCTTACACTAG
LOC_Os03g01130
Os.5800.1.S1_at--605--6391Chr03:82007..82031 (25 bp)
GATTGTCTAACTGTGGCGAAGGGCC
LOC_Os03g01130
Os.5800.1.S1_at--124--4591Chr03:82022..82046 (25 bp)
GCGAAGGGCCATGTTTCCATTATAA
LOC_Os03g01130
Os.5800.1.S1_at--356--10231Chr03:82142..82166 (25 bp)
TTTGAGTTACCTAGGTGGGCTTCCT
LOC_Os03g01130
Os.5800.1.S1_at--406--2811Chr03:82226..82250 (25 bp)
AAGTTGAATAGATGTTCGGTCCGTC
LOC_Os03g01130
Os.5800.1.S1_at--442--6111Chr03:82310..82334 (25 bp)
GAGGGCTGATGCTTTACTGGAGTAA
LOC_Os03g01130
Os.5800.1.S1_at--344--1951Chr03:82325..82349 (25 bp)
ACTGGAGTAATGTAGCCGTCTTAAT
LOC_Os03g01130
Target Sequence 
ACTCCTGGCAGGGATAGCTTGTAATTGCATGTATTCTCCATTGATATAGTTCAAGTATTACTTGTGGGGTTGTTTTCTGA
GGATCAATCTGATGATTTCTTGCTGAGTGGCGATGTGGCTGGAGGAGGGGTATGCTGTGGGCAGTCAACCTTGAATAGTT
GAATGTATAATCCATGAATGGTAATTCTGTGTGTCTTACACTAGAGGTAGTGAATGTGATTGTCTAACTGTGGCGAAGGG
CCATGTTTCCATTATAAGTATATGCTGTTTTGAGAGAGGGGAGGGGAGGGGAGGAGTGCGTTGACAGTGTGGTATGTATA
TGCTGTAACTAGTTGGAGAATGATTGACTTCATTTGAGTTACCTAGGTGGGCTTCCTGTTTTGTTTTGTTGTGTGTAACT
GATTTGTTTGTACAAATGAATGATTTGCAGTTGTGGAAGTTGAATAGATGTTCGGTCCGTCNCTCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTATTGTTTGAGAGGGCTGATGCTTTACTGGAGTAATGTAGCCGTCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis