Browse Element(s) Details


Os.8944.1.S1_at

Description gb:AK120839.1
DB_XREF= gi:37990462
TID=Os.8944.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022G01, full insert sequence.
FL= gb:AK120839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0115011/11Palmitoyl protein thioesterase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01110Os.40388.2.S1_s_at11/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.36367.1.S1_at5/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.40388.2.S1_x_at2/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.4648.1.S1_at1/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01120Os.52670.1.S1_at11/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01120Os.19569.1.S1_at1/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01130Os.5800.1.S1_at11/113+79093..82361UPF0326 protein CGI-146 homolog, putative, expressed
LOC_Os03g01140NANA3+82897..83326hypothetical protein
LOC_Os03g01150Os.8944.1.S1_at11/113+84875..88867Palmitoyl protein thioesterase containing protein, expressed
LOC_Os03g01160OsAffx.24929.1.S1_at11/113+88732..92755U-box domain containing protein, expressed
LOC_Os03g01170Os.50315.1.S1_at11/113+94138..97439Hexose carrier protein HEX6, putative, expressed
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008474molecular_functionpalmitoyl-(protein) hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8944.1.S1_at--677--411Chr03:88250..88269 (20 bp)
ATCATGTTTCAGGATGACGCTGTCT
LOC_Os03g01150
Os.8944.1.S1_at--1048--5791Chr03:88260..88284 (25 bp)
GACGCTGTCTTGATACCTCGGGAAA
LOC_Os03g01150
Os.8944.1.S1_at--446--2491Chr03:88283..88307 (25 bp)
AACAGCATGGTTTGGTTACTATCCA
LOC_Os03g01150
Os.8944.1.S1_at--640--831Chr03:88309..88333 (25 bp)
ATGGAGGTTTCGATCCTGTCCTGCC
LOC_Os03g01150
Os.8944.1.S1_at--1119--951Chr03:88453..88477 (25 bp)
AGGACTGGATTGGTCTCAAGACGCT
LOC_Os03g01150
Os.8944.1.S1_at--1008--6111Chr03:88492..88516 (25 bp)
GAGTGAAATTCGTGTCCGTGCCAGG
LOC_Os03g01150
Os.8944.1.S1_at--953--7591Chr03:88518..88542 (25 bp)
GGGCACCTGGGTATTTCCAAGACTG
LOC_Os03g01150
Os.8944.1.S1_at--257--5331Chr03:88550..88574 (25 bp)
GAAGTACATCGTGCCCTACTTGAAG
LOC_Os03g01150
Os.8944.1.S1_at--1071--2931Chr03:88590..88614 (25 bp)
AAGGCTTGGATTGCTGCGACTTGGC
LOC_Os03g01150
Os.8944.1.S1_at--314--5391Chr03:88641..88665 (25 bp)
GAAGCGTTTGTGCTCAACTAGCTAC
LOC_Os03g01150
Os.8944.1.S1_at--525--2031Chr03:88670..88694 (25 bp)
ACTAGTATCATGTTGCAGCCTCTTT
LOC_Os03g01150
Target Sequence 
ATCATGTTTCAGGATGACGCTGTCTTGATACCTCGGGAAACAGCATGGTTTGGTTACTATCCAGATGGAGGTTTCGATCC
TGTCCTGCCCCCTCAGAAGACAAAGCTGTACATGGAGGACTGGATTGGTCTCAAGACGCTGGATGATGAGGGGAGAGTGA
AATTCGTGTCCGTGCCAGGGGGGCACCTGGGTATTTCCAAGACTGACATGATGAAGTACATCGTGCCCTACTTGAAGGGA
AAGGACAATGGAAAGGCTTGGATTGCTGCGACTTGGCGTGCCATCACCAACACCATCGGTGGGGAAGCGTTTGTGCTCAA
CTAGCTACTAGTACTAGTATCATGTTGCAGCCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis