Browse Element(s) Details


Os.50315.1.S1_at

Description gb:AK069891.1
DB_XREF= gi:32979915
TID=Os.50315.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50315 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023100P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037O19, full insert sequence.
FL= gb:AK069891.1 gb:AK100524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0117011/11Hexose carrier protein HEX6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01120Os.52670.1.S1_at11/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01120Os.19569.1.S1_at1/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01130Os.5800.1.S1_at11/113+79093..82361UPF0326 protein CGI-146 homolog, putative, expressed
LOC_Os03g01140NANA3+82897..83326hypothetical protein
LOC_Os03g01150Os.8944.1.S1_at11/113+84875..88867Palmitoyl protein thioesterase containing protein, expressed
LOC_Os03g01160OsAffx.24929.1.S1_at11/113+88732..92755U-box domain containing protein, expressed
LOC_Os03g01170Os.50315.1.S1_at11/113+94138..97439Hexose carrier protein HEX6, putative, expressed
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01216Os.47744.1.S1_at11/113+117800..121749phosphatidylserine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50315.1.S1_at--642--10111Chr03:94674..94698 (25 bp)
TATGTGCAACCATTTGTGGCCTCAC
LOC_Os03g01170
Os.50315.1.S1_at--774--9671Chr03:94653..94677 (25 bp)
TCACGCCTTGTTAACTCTCTGTAAC
LOC_Os03g01170
Os.50315.1.S1_at--293--6851Chr03:94588..94612 (25 bp)
GTTTCCTCTATAAAGTTGTCCGTAT
LOC_Os03g01170
Os.50315.1.S1_at--58--10491Chr03:94563..94587 (25 bp)
TTAAATTGGTTGGACATCACCCATA
LOC_Os03g01170
Os.50315.1.S1_at--445--4571Chr03:94444..94468 (25 bp)
GCGCGCATTTGTATCCATCTGCTTT
LOC_Os03g01170
Os.50315.1.S1_at--830--571Chr03:94432..94456 (25 bp)
ATCCATCTGCTTTTTATTCCTTTTC
LOC_Os03g01170
Os.50315.1.S1_at--696--8731Chr03:94341..94365 (25 bp)
TGTAGACCGACACTATCGAGGGAGT
LOC_Os03g01170
Os.50315.1.S1_at--608--8031Chr03:94321..94345 (25 bp)
GGAGTAGATCTCGACCATGGTATTT
LOC_Os03g01170
Os.50315.1.S1_at--1102--1332Chr04:22186792..22186811 (20 bp)
AGAGTATGAGAATCGTTGGTGCCAA
NONE
Os.50315.1.S1_at--215--3111Chr03:94193..94217 (25 bp)
AATAGTTCTACTTCTATTGGCTGAA
LOC_Os03g01170
Os.50315.1.S1_at--1038--1611Chr03:94169..94193 (25 bp)
AGCTGGTGTTGCCTTCATGTATCAA
LOC_Os03g01170
Target Sequence 
TATGTGCAACCATTTGTGGCCTCACGCCTTGTTAACTCTCTGTAACAGTATTACTATGCATATATATAATTTGCATAATG
GAAGATGTTTCCTCTATAAAGTTGTCCGTATTTAAATTGGTTGGACATCACCCATATCCAATCAACATGAGTCTAAGTTA
ACTATTATACACCCCCTCTCAGCCTAGCCAACCCAACCCAATTGGCTCACCCCATCACACACACTGTCCCGCGCGCATTT
GTATCCATCTGCTTTTTATTCCTTTTCCTTTTTTTCTTTGCTTATTAGTCAACGCTATTTTGATATATAATCAACGTCAC
TAATTATTAATTTGTAGACCGACACTATCGAGGGAGTAGATCTCGACCATGGTATTTGTAGAGTATGAGAATCGTTGGTG
CCAAGGTATACACGAGATTAAGGTAAGAGAGACTGGAGACAAGGACTTTTATATAAGTTCAGTCCCCTTAACTTACAATT
AATAGTTCTACTTCTATTGGCTGAAGCTGGTGTTGCCTTCATGTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50315.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis