Browse Element(s) Details


OsAffx.24929.1.S1_at

Description tigr:9631.m00017
TID=OsAffx.24929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=U-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0116011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01120Os.52670.1.S1_at11/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01120Os.19569.1.S1_at1/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01130Os.5800.1.S1_at11/113+79093..82361UPF0326 protein CGI-146 homolog, putative, expressed
LOC_Os03g01140NANA3+82897..83326hypothetical protein
LOC_Os03g01150Os.8944.1.S1_at11/113+84875..88867Palmitoyl protein thioesterase containing protein, expressed
LOC_Os03g01160OsAffx.24929.1.S1_at11/113+88732..92755U-box domain containing protein, expressed
LOC_Os03g01170Os.50315.1.S1_at11/113+94138..97439Hexose carrier protein HEX6, putative, expressed
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24929.1.S1_at--68--991Chr03:89320..89344 (25 bp)
AGGAGATGGCTGACCTAGCGCTCAG
LOC_Os03g01160
OsAffx.24929.1.S1_at--94--9491Chr03:89089..89206 (25 bp)
TCTGCCCCATACTCAAGAGGGTTAT
LOC_Os03g01160
OsAffx.24929.1.S1_at--748--9011Chr03:89065..89089 (25 bp)
TGCAAGAGCCGTGCATCGCGTCGGA
LOC_Os03g01160
OsAffx.24929.1.S1_at--793--6971Chr03:89031..89055 (25 bp)
GTACGAGCGCCACGCCATTGAGATG
LOC_Os03g01160
OsAffx.24929.1.S1_at--392--2231Chr03:88996..89020 (25 bp)
ACAAGGATGTGTCTCCGGTCACCAA
LOC_Os03g01160
OsAffx.24929.1.S1_at--535--3971Chr03:88981..89005 (25 bp)
CGGTCACCAATGTTCGGATGCCAAA
LOC_Os03g01160
OsAffx.24929.1.S1_at--888--3911Chr03:88911..88935 (25 bp)
CTGGAAGTCCCAGGGTGGCCGCAAA
LOC_Os03g01160
OsAffx.24929.1.S1_at--1024--3111Chr03:88876..88900 (25 bp)
AATTTGTTACTACTTCTCCGAATCA
LOC_Os03g01160
OsAffx.24929.1.S1_at--367--6451Chr03:88831..88855 (25 bp)
GATCAGCTCAATTTTGTCTTCATAT
LOC_Os03g01160
OsAffx.24929.1.S1_at--290--1171Chr03:88801..88825 (25 bp)
AGTACTTGTTACTTGAACTCCTAGT
LOC_Os03g01160
OsAffx.24929.1.S1_at--1073--5451Chr03:88787..88811 (25 bp)
GAACTCCTAGTTTGGTGAATGTATA
LOC_Os03g01160
Target Sequence 
AGGAGATGGCTGACCTAGCGCTCAGGTGCCTGGAGATGAGAGGCAAGGACCGTCCTGACCTCAAGACCAGGGTCGCCGTC
GACCTGGACCGCCTCAAACGCCGGGCACTGCCAACGCAGCCGCCGCCGGAGCACTTCATCTGCCCCATACTCAAGAGGGT
TATGCAAGAGCCGTGCATCGCGTCGGACGGCTACTCGTACGAGCGCCACGCCATTGAGATGTGGGTGTGCGACAAGGATG
TGTCTCCGGTCACCAATGTTCGGATGCCAAACAAGACACTTGTGCCCAACCGCTCTCTGCTCACCGCCATCACTGCCTGG
AAGTCCCAGGGTGGCCGCAAACCCACAAATAAATTTGTTACTACTTCTCCGAATCATTTGTGATACCATCATGTAAGATC
AGCTCAATTTTGTCTTCATATATAGGAGTACTTGTTACTTGAACTCCTAGTTTGGTGAATGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis