Browse Element(s) Details


Os.21786.1.S1_at

Description gb:AK069374.1
DB_XREF= gi:32979398
TID=Os.21786.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.21786 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012O14, full insert sequence.
FL= gb:AK061143.1 gb:AK069374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0119011/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01120Os.52670.1.S1_at11/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01120Os.19569.1.S1_at1/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01130Os.5800.1.S1_at11/113+79093..82361UPF0326 protein CGI-146 homolog, putative, expressed
LOC_Os03g01140NANA3+82897..83326hypothetical protein
LOC_Os03g01150Os.8944.1.S1_at11/113+84875..88867Palmitoyl protein thioesterase containing protein, expressed
LOC_Os03g01160OsAffx.24929.1.S1_at11/113+88732..92755U-box domain containing protein, expressed
LOC_Os03g01170Os.50315.1.S1_at11/113+94138..97439Hexose carrier protein HEX6, putative, expressed
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01216Os.47744.1.S1_at11/113+117800..121749phosphatidylserine decarboxylase, putative, expressed
LOC_Os03g01222Os.49336.1.S1_s_at11/113+122969..126116Formyl transferase family protein, expressed
LOC_Os03g01230Os.7495.1.S1_at11/113+126530..127404DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0030154biological_processcell differentiation
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21786.1.S1_at--393--91Chr03:101802..101826 (25 bp)
ATTCCGCTGAGCGATCTGGCAAGCA
LOC_Os03g01190
Os.21786.1.S1_at--550--2851Chr03:101778..101802 (25 bp)
AAGTCGCTGTTGGTAACAAGGCCCA
LOC_Os03g01190
Os.21786.1.S1_at--403--2951Chr03:101761..101785 (25 bp)
AAGGCCCAGCCTGATGCATTACACT
LOC_Os03g01190
Os.21786.1.S1_at--220--4851Chr03:101736..101760 (25 bp)
GCTACCCGCGACGAGTTGCTGGAGT
LOC_Os03g01190
Os.21786.1.S1_at--340--7711Chr03:101678..101702 (25 bp)
GGGTGTTGCGCATCCGTGTGAACCA
LOC_Os03g01190
Os.21786.1.S1_at--452--5431Chr03:101659..101683 (25 bp)
GAACCACACATATCCATTGTCTCAA
LOC_Os03g01190
Os.21786.1.S1_at--556--611Chr03:101621..101645 (25 bp)
ATGCGGATCTCCAGGCCAGGAAGAC
LOC_Os03g01190
Os.21786.1.S1_at--890--2411Chr03:101519..101543 (25 bp)
AAAAAGTGTCTCTTCTCCAATGCCG
LOC_Os03g01190
Os.21786.1.S1_at--1100--4131Chr03:101496..101520 (25 bp)
CGCTGCTGTTTCTTACTTTAGTACT
LOC_Os03g01190
Os.21786.1.S1_at--280--10451Chr03:101479..101503 (25 bp)
TTAGTACTCCTGTATTTTTCATGCA
LOC_Os03g01190
Os.21786.1.S1_at--658--9631Chr03:101447..101471 (25 bp)
TCAGGTTCAGGTTTGGTTGCCAGTT
LOC_Os03g01190
Target Sequence 
ATTCCGCTGAGCGATCTGGCAAGCAAGTCGCTGTTGGTAACAAGGCCCAGCCTGATGCATTACACTGCTACCCGCGACGA
GTTGCTGGAGTCGGCCGGTGAGGTGTTTGCCAATGTAGGAAGCGGGGTGTTGCGCATCCGTGTGAACCACACATATCCAT
TGTCTCAAGCTGCTCGCGCTCATGCGGATCTCCAGGCCAGGAAGACGACCGGATCCATCCTGCTCATCCCAGATGATGCA
TGATACTCCAGTACTAGTGTAGGAGTAGTAGTTATTCCAGTACAAAAAGTGTCTCTTCTCCAATGCCGCTGCTGTTTCTT
ACTTTAGTACTCCTGTATTTTTCATGCATTATCAATCAGGTTCAGGTTTGGTTGCCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis