Browse Element(s) Details


Os.52670.1.S1_at

Description gb:AK068699.1
DB_XREF= gi:32978716
TID=Os.52670.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158O09, full insert sequence.
FL= gb:AK068699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0112011/11Plasma membrane ATPase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01090Os.54609.1.S1_at11/113+41732..44465expressed protein
LOC_Os03g01100Os.26921.1.S1_at11/113+44753..50145ERCC4 domain containing protein, expressed
LOC_Os03g01110Os.40388.2.S1_s_at11/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.36367.1.S1_at5/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.40388.2.S1_x_at2/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.4648.1.S1_at1/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01120Os.52670.1.S1_at11/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01120Os.19569.1.S1_at1/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01130Os.5800.1.S1_at11/113+79093..82361UPF0326 protein CGI-146 homolog, putative, expressed
LOC_Os03g01140NANA3+82897..83326hypothetical protein
LOC_Os03g01150Os.8944.1.S1_at11/113+84875..88867Palmitoyl protein thioesterase containing protein, expressed
LOC_Os03g01160OsAffx.24929.1.S1_at11/113+88732..92755U-box domain containing protein, expressed
LOC_Os03g01170Os.50315.1.S1_at11/113+94138..97439Hexose carrier protein HEX6, putative, expressed
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52670.1.S1_at--812--10691Chr03:76811..76835 (25 bp)
TTGCCACCTGGGAGGTTGCTAGCAT
LOC_Os03g01120
Os.52670.1.S1_at--979--10011Chr03:76830..76854 (25 bp)
TAGCATCAGAGGTATCGGTTGGCGC
LOC_Os03g01120
Os.52670.1.S1_at--394--2511Chr03:76879..76903 (25 bp)
AACATTGTTGTCTACCTTTTGCTAG
LOC_Os03g01120
Os.52670.1.S1_at--282--5811Chr03:76903..76927 (25 bp)
GACCCAATGAAATTCGCCGTGCGAT
LOC_Os03g01120
Os.52670.1.S1_at--520--8151Chr03:76940..76964 (25 bp)
GGAAAGCCTGGAACCTTGTCATTGA
LOC_Os03g01120
Os.52670.1.S1_at--876--2691Chr03:77085..77109 (25 bp)
AAGCTCGCGTGGTTGCTTGGGCACA
LOC_Os03g01120
Os.52670.1.S1_at--198--3851Chr03:77160..77184 (25 bp)
CTGCATCAACGGAGCTCAACCAAAT
LOC_Os03g01120
Os.52670.1.S1_at--899--871Chr03:77193..77217 (25 bp)
AGGCCAGACGGCGTGCTGAGATTAC
LOC_Os03g01120
Os.52670.1.S1_at--534--4951Chr03:77498..77522 (25 bp)
GCATTATGCCATCTCTGAACATCGA
LOC_Os03g01120
Os.52670.1.S1_at--346--6411Chr03:77521..77545 (25 bp)
GATCTGACTCCCTAGACAGTAGTAT
LOC_Os03g01120
Os.52670.1.S1_at--212--6391Chr03:77591..77615 (25 bp)
GATCGAACATTTACTCTCCTCGTAA
LOC_Os03g01120
Target Sequence 
TTGCCACCTGGGAGGTTGCTAGCATCAGAGGTATCGGTTGGCGCTGGGCAGGGGCTATTTGGGTGTACAACATTGTTGTC
TACCTTTTGCTAGACCCAATGAAATTCGCCGTGCGATATGGCCTTAGTGGGAAAGCCTGGAACCTTGTCATTGATAACAA
GGTAGCTTTTACAAACCGGAAAGATTTCGGAAGGGAAGCTCGCGTGGTTGCTTGGGCACACGAGCAGCGCACACTACACG
GGCTGCAGTCTGCTGCAAGCCGGGAGAAAGCTGCATCAACGGAGCTCAACCAAATGGCTGAAGAGGCCAGACGGCGTGCT
GAGATTACAAGGTTGAGGGAATTGCACACTCTGAAAGGAAAGGTGGAATCTGTGGCTAAACTGAAAGGAATCGACTTGGA
GGATGTCAACAATCAACACTACACTGTTTAACCTACAACACGACAATGCATTATGCATTATGCCATCTCTGAACATCGAT
CTGACTCCCTAGACAGTAGTATTGTTTAGTATTTTCCTTTCCCATCCCATTTGGTTTATTGCATGTGGATCGAACATTTA
CTCTCCTCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis