Browse Element(s) Details


Os.54609.1.S1_at

Description gb:AK106235.1
DB_XREF= gi:32991444
TID=Os.54609.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54609 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C01, full insert sequence.
FL= gb:AK106235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0109011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01050NANA3+14629..16914retrotransposon protein, putative, unclassified
LOC_Os03g01060Os.47114.1.S1_x_at2/113+17536..23941retrotransposon protein, putative, unclassified
LOC_Os03g01060OsAffx.32036.1.S1_at1/113+17536..23941retrotransposon protein, putative, unclassified
LOC_Os03g01060OsAffx.22896.1.S1_x_at1/113+17536..23941retrotransposon protein, putative, unclassified
LOC_Os03g01060Os.28943.1.S1_x_at1/113+17536..23941retrotransposon protein, putative, unclassified
LOC_Os03g01070Os.28943.1.S1_x_at2/113+28481..31615retrotransposon protein, putative, unclassified
LOC_Os03g01080NANA3+32238..38201retrotransposon protein, putative, unclassified
LOC_Os03g01090Os.54609.1.S1_at11/113+41732..44465expressed protein
LOC_Os03g01100Os.26921.1.S1_at11/113+44753..50145ERCC4 domain containing protein, expressed
LOC_Os03g01110Os.40388.2.S1_s_at11/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.36367.1.S1_at5/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.40388.2.S1_x_at2/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.4648.1.S1_at1/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01120Os.52670.1.S1_at11/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01120Os.19569.1.S1_at1/113+67390..77638Plasma membrane ATPase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54609.1.S1_at--452--2131Chr03:43888..43912 (25 bp)
ACACTGGAAGTCGATGGTTTACCCT
LOC_Os03g01090
Os.54609.1.S1_at--280--6011Chr03:43920..43944 (25 bp)
GAGAGCGAAAGAAGCCTGCCCAGCA
LOC_Os03g01090
Os.54609.1.S1_at--557--391Chr03:43974..43998 (25 bp)
ATCAGGGCCGGAGTTCTTGATCAGC
LOC_Os03g01090
Os.54609.1.S1_at--129--5871Chr03:44024..44048 (25 bp)
GAGCCTACACTGTGTTTGGGTCTGT
LOC_Os03g01090
Os.54609.1.S1_at--590--8151Chr03:44076..44100 (25 bp)
GGAAATGGCACTGCTGTCGACCAGC
LOC_Os03g01090
Os.54609.1.S1_at--387--9111Chr03:44132..44156 (25 bp)
TGCTGCGAGACCCTGTGTATTTCAA
LOC_Os03g01090
Os.54609.1.S1_at--296--3411Chr03:44172..44196 (25 bp)
CAGCAGTGGTGTTCCTTAGGTATCA
LOC_Os03g01090
Os.54609.1.S1_at--592--10431Chr03:44187..44211 (25 bp)
TTAGGTATCACTCATTCGCTCACTC
LOC_Os03g01090
Os.54609.1.S1_at--714--2011Chr03:44208..44232 (25 bp)
ACTCACTTTCAGTCGGTTGGTCGGT
LOC_Os03g01090
Os.54609.1.S1_at--287--6631Chr03:44223..44247 (25 bp)
GTTGGTCGGTTCTTGTGCTCATTGC
LOC_Os03g01090
Os.54609.1.S1_at--67--2571Chr03:44405..44429 (25 bp)
AACTGTTTACCTGCTCATCTTTATG
LOC_Os03g01090
Target Sequence 
ACACTGGAAGTCGATGGTTTACCCTTTAAGGAGAGAGCGAAAGAAGCCTGCCCAGCACTGAGAAGAGGATCGGTTGCATG
GGTTGGATCAGGGCCGGAGTTCTTGATCAGCTTAGCAAACCATGGGGAGTGGAAAGGAGCCTACACTGTGTTTGGGTCTG
TTGTGCCCGAGGACATGGCGATTGCTGAGGAAATGGCACTGCTGTCGACCAGCACAGACGTGTGGAGCAATGTAACCGTG
AAGGTGCTGCGAGACCCTGTGTATTTCAAGGTGAAGAGAAGCACCAGCAGTGGTGTTCCTTAGGTATCACTCATTCGCTC
ACTCACTTTCAGTCGGTTGGTCGGTTCTTGTGCTCATTGCCGATTCCTNTCTGGACTATCTTTGNTTCTTATAGAGGACA
TAAAAGAAAGGGAAACTAGATTAGAATCANGCATGNTATAGCCCCNTGACATGTAGTAGTATTACCCTAAAGAAAANGGG
ANTACTGNGTAAAGAAAGAAACTAAAGNTGNCATGNTCAACTGTTTACCTGCTCATCTTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54609.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis