Browse Element(s) Details


Os.36367.1.S1_at

Description gb:AK063593.1
DB_XREF= gi:32973611
TID=Os.36367.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B02, full insert sequence.
FL= gb:AK063593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g011105/11RNA methyltransferase, TrmH family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01070Os.28943.1.S1_x_at2/113+28481..31615retrotransposon protein, putative, unclassified
LOC_Os03g01080NANA3+32238..38201retrotransposon protein, putative, unclassified
LOC_Os03g01090Os.54609.1.S1_at11/113+41732..44465expressed protein
LOC_Os03g01100Os.26921.1.S1_at11/113+44753..50145ERCC4 domain containing protein, expressed
LOC_Os03g01110Os.40388.2.S1_s_at11/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.36367.1.S1_at5/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.40388.2.S1_x_at2/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.4648.1.S1_at1/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01120Os.52670.1.S1_at11/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01120Os.19569.1.S1_at1/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01130Os.5800.1.S1_at11/113+79093..82361UPF0326 protein CGI-146 homolog, putative, expressed
LOC_Os03g01140NANA3+82897..83326hypothetical protein
LOC_Os03g01150Os.8944.1.S1_at11/113+84875..88867Palmitoyl protein thioesterase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0008173molecular_functionRNA methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36367.1.S1_at--379--1391Chr03:63321..63345 (25 bp)
AGACGGCCAACAGCAAGCCACTGGA
LOC_Os03g01110
Os.36367.1.S1_at--952--2931Chr03:63545..63569 (25 bp)
AAGGCATCCCGGTGGATATCATCCA
LOC_Os03g01110
Os.36367.1.S1_at--809--4971Chr03:63605..63629 (25 bp)
GCATCGTCAGGTCACTCAATGTTCA
LOC_Os03g01110
Os.36367.1.S1_at--1068--9711Chr03:63620..63644 (25 bp)
TCAATGTTCATGTCAGCGGTGCCAT
LOC_Os03g01110
Os.36367.1.S1_at--561--71Chr03:63643..63667 (25 bp)
ATTGCCGTGTGGGAATACACCCGCC
LOC_Os03g01110
Os.36367.1.S1_at--777--5151Chr03:63669..63693 (25 bp)
GCAACGCATCGCAACTTAATTTCTG
NONE
Os.36367.1.S1_at--622--1611Chr03:63724..63748 (25 bp)
AGCTGTTCCTTGTTACTAGTACTCC
NONE
Os.36367.1.S1_at--455--711Chr03:63814..63838 (25 bp)
ATGATAGTACTCCACTTGTCTTGCC
NONE
Os.36367.1.S1_at--475--8731Chr03:63830..63854 (25 bp)
TGTCTTGCCCGTACATACAGCACAA
NONE
Os.36367.1.S1_at--837--9031Chr03:63871..63895 (25 bp)
TGCACCCCAGCTATTGTTATTACCA
NONE
Os.36367.1.S1_at--1008--6731Chr03:63910..63934 (25 bp)
GTTCTTGCTAGTAATGCCACGCACT
NONE
Target Sequence 
AGACGGCCAACAGCAAGCCACTGGACCACTTCTCTTTTCCGAGCAAAACGGTGCTTGTGCTGGGACGGGAGAAGGAAGGC
ATCCCGGTGGATATCATCCATGTGTTGGNCGCATGCGTGGAGATCCCGCAGCTGGGCATCGTCAGGTCACTCAATGTTCA
TGTCAGCGGTGCCATTGCCGTGTGGGAATACACCCGCCAGCAACGCATCGCAACTTAATTTCTGTTTGNGCAGAAATCAA
CTTAATTTTCTCAAAGCTGTTCCTTGTTACTAGTACTCCTACTCCATAGTGGAGTCTGTATTATATGTATTCATCAATCG
GTTAGAACTAGAAACAAATGAGAGATGATAGTACTCCACTTGTCTTGCCCGTACATACAGCACAACTNTACTGTCCTGAC
CTGCACCCCAGCTATTGTTATTACCAAAAAACCCATATTTGTTCTTGCTAGTAATGCCACGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis