Browse Element(s) Details


Os.26921.1.S1_at

Description gb:AK121880.1
DB_XREF= gi:37991503
TID=Os.26921.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151H20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033104L13, full insert sequence.
FL= gb:AK121880.1 gb:AK068556.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0110011/11ERCC4 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01060Os.47114.1.S1_x_at2/113+17536..23941retrotransposon protein, putative, unclassified
LOC_Os03g01060OsAffx.32036.1.S1_at1/113+17536..23941retrotransposon protein, putative, unclassified
LOC_Os03g01060OsAffx.22896.1.S1_x_at1/113+17536..23941retrotransposon protein, putative, unclassified
LOC_Os03g01060Os.28943.1.S1_x_at1/113+17536..23941retrotransposon protein, putative, unclassified
LOC_Os03g01070Os.28943.1.S1_x_at2/113+28481..31615retrotransposon protein, putative, unclassified
LOC_Os03g01080NANA3+32238..38201retrotransposon protein, putative, unclassified
LOC_Os03g01090Os.54609.1.S1_at11/113+41732..44465expressed protein
LOC_Os03g01100Os.26921.1.S1_at11/113+44753..50145ERCC4 domain containing protein, expressed
LOC_Os03g01110Os.40388.2.S1_s_at11/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.36367.1.S1_at5/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.40388.2.S1_x_at2/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01110Os.4648.1.S1_at1/113+50375..63687RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g01120Os.52670.1.S1_at11/113+67390..77638Plasma membrane ATPase 1, putative, expressed
LOC_Os03g01120Os.19569.1.S1_at1/113+67390..77638Plasma membrane ATPase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006289biological_processnucleotide-excision repair
GO:0000014molecular_functionsingle-stranded DNA specific endodeoxyribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26921.1.S1_at--1079--10511Chr03:49468..49492 (25 bp)
TTCATTACTAGTCCTGCATTTTCCT
LOC_Os03g01100
Os.26921.1.S1_at--846--8291Chr03:49494..49518 (25 bp)
GGCTTCGCATAGTCTGGTCTCGCAG
LOC_Os03g01100
Os.26921.1.S1_at--174--4991Chr03:49522..49546 (25 bp)
GCATGCCACGGCAGATATATTCCTA
LOC_Os03g01100
Os.26921.1.S1_at--958--3071Chr03:49748..49772 (25 bp)
AATACGTCCGCGATTGAATTCTTGA
LOC_Os03g01100
Os.26921.1.S1_at--413--6211Chr03:49774..49798 (25 bp)
GAGGCTTCCTGGTGTGACAGATTCA
LOC_Os03g01100
Os.26921.1.S1_at--122--3111Chr03:49826..49850 (25 bp)
AATAGCTTAGCAGAGCTGGCCCTGC
LOC_Os03g01100
Os.26921.1.S1_at--52--8251Chr03:49894..49918 (25 bp)
GGCACGCATGCTCAAGGAATTTCTC
LOC_Os03g01100
Os.26921.1.S1_at--789--5211Chr03:49910..49934 (25 bp)
GAATTTCTCGATGCCAAGTGTCCAA
LOC_Os03g01100
Os.26921.1.S1_at--444--1091Chr03:49926..49950 (25 bp)
AGTGTCCAACTATGCTCTAGGGCTG
LOC_Os03g01100
Os.26921.1.S1_at--644--4811Chr03:49939..49963 (25 bp)
GCTCTAGGGCTGTGTAATCTTGTTT
LOC_Os03g01100
Os.26921.1.S1_at--1043--10011Chr03:50063..50087 (25 bp)
TAGAAAGCTTGGGTCACTCGGTCGC
LOC_Os03g01100
Target Sequence 
TTCATTACTAGTCCTGCATTTTCCTCGGCTTCGCATAGTCTGGTCTCGCAGCTTGCATGCCACGGCAGATATATTCCTAT
CACTCAAAACAAACCAGGATGAACCTGATGAGAGCAAGGCAATGAGAGTTGGTGTGCCCTCTGAGGACGGAGTTGTGGAG
AATGACGTGAGGGCTGAAAATTACAATACGTCCGCGATTGAATTCTTGAGGAGGCTTCCTGGTGTGACAGATTCAAACTA
TAGAAGAATAATGGAGGAATGCAATAGCTTAGCAGAGCTGGCCCTGCTTCCGGTAGAGCGGCTGTCTGAGTTGATGGGTA
CTCAGAAAGGGGCACGCATGCTCAAGGAATTTCTCGATGCCAAGTGTCCAACTATGCTCTAGGGCTGTGTAATCTTGTTT
GTAATTGTTGAAAATGATCAATAATGAACTTATTATTCTACTTAGTAAAACCGATTTTAAGATGTGGATGGTGAAGAGTG
ATGAATGTACAACCCTTACTAGAAAGCTTGGGTCACTCGGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26921.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis