Browse Element(s) Details


Os.11115.2.S1_at

Description gb:AK061092.1
DB_XREF= gi:32971110
TID=Os.11115.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H10, full insert sequence.
FL= gb:AK103196.1 gb:AK104399.1 gb:AK061092.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g012109/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01150Os.8944.1.S1_at11/113+84875..88867Palmitoyl protein thioesterase containing protein, expressed
LOC_Os03g01160OsAffx.24929.1.S1_at11/113+88732..92755U-box domain containing protein, expressed
LOC_Os03g01170Os.50315.1.S1_at11/113+94138..97439Hexose carrier protein HEX6, putative, expressed
LOC_Os03g01180Os.4977.1.S1_at10/113+99225..101185phosphoglycerate mutase family protein, expressed
LOC_Os03g01190Os.21786.1.S1_at11/113+101219..103474oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g01200Os.7306.1.S1_at11/113+103697..111082SNF2P, putative, expressed
LOC_Os03g01210Os.11115.1.S1_x_at11/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01210Os.11115.2.S1_at9/113+113581..115977Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g01216Os.47744.1.S1_at11/113+117800..121749phosphatidylserine decarboxylase, putative, expressed
LOC_Os03g01222Os.49336.1.S1_s_at11/113+122969..126116Formyl transferase family protein, expressed
LOC_Os03g01230Os.7495.1.S1_at11/113+126530..127404DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative, expressed
LOC_Os03g01240OsAffx.12698.1.S1_at10/113+130705..148398CCR4-Not complex component, Not1 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11115.2.S1_at--461--3291Chr03:115570..115594 (25 bp)
CAAAGGGTGAGCATGAGGAACCCAA
LOC_Os03g01210
Os.11115.2.S1_at--401--5451Chr03:115587..115611 (25 bp)
GAACCCAAGAGTGATCACGATGATG
LOC_Os03g01210
Os.11115.2.S1_at--442--3351Chr03:115602..115626 (25 bp)
CACGATGATGTGGAGGTGATACCTC
LOC_Os03g01210
Os.11115.2.S1_at--362--6151Chr03:115614..115638 (25 bp)
GAGGTGATACCTCTATAGGGTGAAT
LOC_Os03g01210
Os.11115.2.S1_at--223--3631Chr03:115904..115928 (25 bp)
CTTGATTTTAGCTGTGTTTGACACT
LOC_Os03g01210
Os.11115.2.S1_at--635--7411Chr03:115917..115942 (25 bp)
GTGTTTGACACTTGTGACCTTCATT
LOC_Os03g01210
Os.11115.2.S1_at--849--2171Chr03:115924..115949 (25 bp)
ACACTTGTGACCTTCATTGGTCCTA
LOC_Os03g01210
Os.11115.2.S1_at--43--1731Chr03:115935..115958 (24 bp)
ACCTTCATTGGTCCTAAGAGAAACA
LOC_Os03g01210
Os.11115.2.S1_at--1068--5531Chr03:115953..115977 (25 bp)
GAAACAGTTAATTCGTCTGTCCATG
LOC_Os03g01210
Os.11115.2.S1_at--1024--6751Chr03:115959..115983 (25 bp)
GTTAATTCGTCTGTCCATGTAGTAA
NONE
Os.11115.2.S1_at--451--3891Chr03:115969..115993 (25 bp)
CTGTCCATGTAGTAAGTTTGTTCTT
NONE
Target Sequence 
CAAAGGGTGAGCATGAGGAACCCAAGAGTGATCACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGAT
ATTCTTTCTGATAATAGGATAGCANAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGCGACGATGTTCTTGTG
TCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTCTTTTTTTTTTTGTACTAGTATTAAAACTTCAA
ATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCA
TCATGTAAAATTCATTCTTGATTTTAGCTGTGTTTGACACTTGTGACCTTCATTGGTCCTAAGAGAAACAGTTAATTCGT
CTGTCCATGTAGTAAGTTTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11115.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis