Browse Element(s) Details


Os.9367.1.S1_a_at

Description gb:AK098947.1
DB_XREF= gi:32984156
TID=Os.9367.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013050E08, full insert sequence.
FL= gb:AK072043.1 gb:AK098947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1691011/11Cysteine desulfurase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16870OsAffx.29878.1.S1_at11/119+10305222..10306406BTB/POZ domain containing protein
LOC_Os09g16880Os.46306.1.S1_x_at2/119+10309955..10313081transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16890NANA9+10315321..10317927transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16899Os.37711.3.S1_x_at1/119+10321000..10321390NA
LOC_Os09g16899OsAffx.28616.1.S1_at1/119+10321000..10321390NA
LOC_Os09g16899OsAffx.31115.1.S1_at1/119+10321000..10321390NA
LOC_Os09g16910Os.9367.1.S1_a_at11/119+10327825..10332198Cysteine desulfurase, mitochondrial precursor, putative, expressed
LOC_Os09g16920Os.5808.1.S1_at11/119+10337557..10339425S276, putative, expressed
LOC_Os09g16920Os.27524.2.S1_at11/119+10337557..10339425S276, putative, expressed
LOC_Os09g16920Os.27524.2.S1_x_at2/119+10337557..10339425S276, putative, expressed
LOC_Os09g16930OsAffx.14848.1.S1_at1/119+10352825..10356205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g16940OsAffx.10633.1.S1_at4/119+10356666..10359190retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9367.1.S1_a_at--978--9011Chr09:10329056..10329080 (25 bp)
TGCACTAGTGCCAGCTTGGAGCCCT
LOC_Os09g16910
Os.9367.1.S1_a_at--492--10871Chr09:10329071..10329095 (25 bp)
TTGGAGCCCTCTTATGTGCTGCGGG
LOC_Os09g16910
Os.9367.1.S1_a_at--803--6951Chr09:10329104..10329128 (25 bp)
GTAGAAGAGGACATGGCGCACACCT
LOC_Os09g16910
Os.9367.1.S1_a_at--991--91Chr09:10329131..10329155 (25 bp)
ATTCGCTTTGGCATTGGCCGCTTTA
LOC_Os09g16910
Os.9367.1.S1_a_at--606--10871Chr09:10329144..10329168 (25 bp)
TTGGCCGCTTTACCACTGAGGAAGA
LOC_Os09g16910
Os.9367.1.S1_a_at--905--1471Chr09:10329178..10329202 (25 bp)
AGCAATTGAGCTCACCGTGCATCAG
LOC_Os09g16910
Os.9367.1.S1_a_at--752--5391Chr09:10329208..10329232 (25 bp)
GAAGCTTCGTGACATGAGTCCACTG
LOC_Os09g16910
Os.9367.1.S1_a_at--633--2931Chr09:10329245..10329269 (25 bp)
AAGGCAGGCATTGACCTCAAGAGTA
LOC_Os09g16910
Os.9367.1.S1_a_at--1157--5831Chr09:10329257..10329281 (25 bp)
GACCTCAAGAGTATCCAGTGGGCGC
LOC_Os09g16910
Os.9367.1.S1_a_at--218--1111Chr09:10329273..10329297 (25 bp)
AGTGGGCGCAGCACTGAGACAGCTT
LOC_Os09g16910
Os.9367.1.S1_a_at--214--5991Chr09:10329288..10329312 (25 bp)
GAGACAGCTTTCACTTAGAGCTAAT
LOC_Os09g16910
Target Sequence 
TGCACTAGTGCCAGCTTGGAGCCCTCTTATGTGCTGCGGGCACTTGGTGTAGAAGAGGACATGGCGCACACCTCCATTCG
CTTTGGCATTGGCCGCTTTACCACTGAGGAAGAGGTTGACAGAGCAATTGAGCTCACCGTGCATCAGGTGAAGAAGCTTC
GTGACATGAGTCCACTGTATGAGATGGCCAAGGCAGGCATTGACCTCAAGAGTATCCAGTGGGCGCAGCACTGAGACAGC
TTTCACTTAGAGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9367.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis